PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC034554.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

M-type_MADS

Protein Properties

Length: 64aa MW: 7118.31 Da PI: 10.811

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC034554.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	92.5	2.1e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri+n++ rqvtfskRrng+lKKA ELS+LCdaev vi+fs tgkly+++s EcC034554.10 9 KRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGVIVFSCTGKLYDFAS 59 79***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.8E-40	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	31.707	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.1E-29	2	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.17E-38	2	60	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.7E-30	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.4E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.7E-30	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.7E-30	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 64 aa Download sequence Send to blast
MGRGKIAIKR IDNSTSRQVT FSKRRNGLLK KARELSILCD AEVGVIVFSC TGKLYDFASS 60 RLDP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	4e-20	1	63	1	63	MEF2C
5f28_B	4e-20	1	63	1	63	MEF2C
5f28_C	4e-20	1	63	1	63	MEF2C
5f28_D	4e-20	1	63	1	63	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269\|PubMed:17704216, ECO:0000269\|PubMed:24876250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the micro RNA miR824. {ECO:0000269\|PubMed:18579782}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018732447.1	8e-34	PREDICTED: MADS-box transcription factor 23-like
Swissprot	A2RVQ5	6e-32	AGL16_ARATH; Agamous-like MADS-box protein AGL16
TrEMBL	V7BTH4	2e-32	V7BTH4_PHAVU; Uncharacterized protein
STRING	XP_010065739.1	6e-35	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	3e-34	AGAMOUS-like 16

Publications ? help Back to Top
Yang K,Jiang M,Le J A new loss-of-function allele 28y reveals a role of ARGONAUTE1 in limiting asymmetric division of stomatal lineage ground cell. J Integr Plant Biol, 2014. 56(6): p. 539-49 [PMID:24386951]