PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC032205.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 473aa    MW: 55486.3 Da    PI: 7.2658
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC032205.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.89.6e-2035118390
          FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                   Y  YA + GF vrk +  ++ ++g+it+rtfvC++eg++ +++++  +++ +r e r+gC a++k k + ++++ev++ ++eHnH++ 
  EcC032205.20  35 YVVYALSKGFGVRKGNLVRN-TKGKITRRTFVCNCEGYSVSSSDQ--EKKFERFEVRCGCLAHIKFKVD-NDVYEVIEYNSEHNHAFI 118
                   999**************999.7777**************999877..9999*****************9.9**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-1735118IPR004330FAR1 DNA binding domain
PfamPF105517.3E-29231325IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0030246Molecular Functioncarbohydrate binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
LETSHFAHVM RDMEKDFEFA IGMVFSNEFE AYNKYVVYAL SKGFGVRKGN LVRNTKGKIT  60
RRTFVCNCEG YSVSSSDQEK KFERFEVRCG CLAHIKFKVD NDVYEVIEYN SEHNHAFIPE  120
DQRHLIRCGR IMSETCKGVL VDMMKAGIGG IMIYKCLANE AGGSKNLGLQ RTRSNGISGE  180
DCLDLLNHFH SMEQQNPMFS YALQVDQDGR LTNIFWRDSL SKIDYDCFGD VLVFDTIHRT  240
DKCNMICAHF VGVNHHWKNI LFGCAFLMDE TVELFIWLFE VFLKSMENKA PKTMFTDQDQ  300
VMEKAIRTVF PNTQHRLCTW HMMKNANQNI PHLYHKPDFR DKYFLALMYR CRSEDEFEST  360
WREMEERWDT KDNIWLWKLY DFRHKWSLAF GRDIFTCGIR SSQRSESINN VFQKIGSKTS  420
TLVQFVYYYE KQVAHMRETE SQDDYSCRGT PKLMVSHDIL KHAASVYTGA IFT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010070164.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 9 isoform X1
RefseqXP_018716555.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 9 isoform X1
RefseqXP_018716556.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 9 isoform X1
TrEMBLA0A059AXR10.0A0A059AXR1_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010070164.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-79FAR1-related sequence 5