PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC031945.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | HSF | ||||||||
Protein Properties | Length: 365aa MW: 40710.1 Da PI: 8.3706 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.9 | 1.1e-35 | 27 | 119 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d+++++++sw ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F+kg+k+ll++i+ EcC031945.20 27 FLTKTYQLVDDPSTDHIVSWGDDDSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFRKGEKHLLCEIH 114 9*****************************************************************99.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ EcC031945.20 115 RRKTA 119 **986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.1E-38 | 17 | 111 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.8E-60 | 23 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.41E-34 | 24 | 116 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 6.7E-20 | 27 | 50 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.0E-31 | 27 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.7E-20 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 66 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.7E-20 | 78 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008356 | Biological Process | asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MAQLMVDKCG EGLLVAVEAQ KAVPAPFLTK TYQLVDDPST DHIVSWGDDD STFVVWRPPE 60 FARDLLPNYF KHNNFSSFVR QLNTYGFRKI VPDRWEFANE FFRKGEKHLL CEIHRRKTAQ 120 PQLTHHHPHS ASPLSGPTPA FFPFPSRLSI SPSDSDDQHS SHWCDSPPPP PPPPLSSPRS 180 GCGGHNNSVG PVASAANYNS SAVTALSEDN ERLRRSNNML MSELAHMKKL YNDIIYFVQN 240 HVKPVAPSTY SWSPPSMVQK PSNQLLGYNN YANAIAAPNN NSCVVTNHVK PVVRSNSNVT 300 QSSLTILEDP PVMNKMKLFG VPLLSKKRLH PEYNSSPVGY METNKARLVL EKDDLGLNLM 360 PPSTC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-21 | 23 | 119 | 17 | 123 | Heat shock factor protein 1 |
5d5u_B | 1e-21 | 23 | 118 | 26 | 131 | Heat shock factor protein 1 |
5d5v_B | 1e-21 | 23 | 118 | 26 | 131 | Heat shock factor protein 1 |
5d5v_D | 1e-21 | 23 | 118 | 26 | 131 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00187 | DAP | Transfer from AT1G46264 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010061734.1 | 0.0 | PREDICTED: heat stress transcription factor B-4 | ||||
Swissprot | Q9C635 | 1e-116 | HSFB4_ARATH; Heat stress transcription factor B-4 | ||||
TrEMBL | A0A059BRY3 | 0.0 | A0A059BRY3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010061734.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2900 | 28 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 1e-106 | heat shock transcription factor B4 |