 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
EcC031945.20 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
| Family |
HSF |
| Protein Properties |
Length: 365aa MW: 40710.1 Da PI: 8.3706 |
| Description |
HSF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| EcC031945.20 | genome | ECGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HSF_DNA-bind | 113.9 | 1.1e-35 | 27 | 119 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98
Fl+k+y++++d+++++++sw ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F+kg+k+ll++i+
EcC031945.20 27 FLTKTYQLVDDPSTDHIVSWGDDDSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFRKGEKHLLCEIH 114
9*****************************************************************99.........******************** PP
XXXXX CS
HSF_DNA-bind 99 rkkse 103
r+k++
EcC031945.20 115 RRKTA 119
**986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0008356 | Biological Process | asymmetric cell division |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 365 aa
Download sequence Send
to blast |
MAQLMVDKCG EGLLVAVEAQ KAVPAPFLTK TYQLVDDPST DHIVSWGDDD STFVVWRPPE 60
FARDLLPNYF KHNNFSSFVR QLNTYGFRKI VPDRWEFANE FFRKGEKHLL CEIHRRKTAQ 120
PQLTHHHPHS ASPLSGPTPA FFPFPSRLSI SPSDSDDQHS SHWCDSPPPP PPPPLSSPRS 180
GCGGHNNSVG PVASAANYNS SAVTALSEDN ERLRRSNNML MSELAHMKKL YNDIIYFVQN 240
HVKPVAPSTY SWSPPSMVQK PSNQLLGYNN YANAIAAPNN NSCVVTNHVK PVVRSNSNVT 300
QSSLTILEDP PVMNKMKLFG VPLLSKKRLH PEYNSSPVGY METNKARLVL EKDDLGLNLM 360
PPSTC
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 2ldu_A | 1e-21 | 23 | 119 | 17 | 123 | Heat shock factor protein 1 |
| 5d5u_B | 1e-21 | 23 | 118 | 26 | 131 | Heat shock factor protein 1 |
| 5d5v_B | 1e-21 | 23 | 118 | 26 | 131 | Heat shock factor protein 1 |
| 5d5v_D | 1e-21 | 23 | 118 | 26 | 131 | Heat shock factor protein 1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
