PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC031547.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 401aa    MW: 44452.1 Da    PI: 5.286
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC031547.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM142.13.2e-44201391129
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                   lppGfrFhPtdee++++yL++kv ++++++ ++++evd+++          + +++++  F+++d+ky+tg+r+nrat+sgyWkatgkdke+++ +g
  EcC031547.30  20 LPPGFRFHPTDEEIITHYLTPKVLNSSFSA-SAVSEVDLNNE--------SQDGRERVVLFCQKDRKYPTGTRTNRATESGYWKATGKDKEIYRGRG 107
                   79**************************99.78999998863........344667889************************************** PP

           NAM  98 elvglkktLvfykgrapkgektdWvmheyrle 129
                   +lvg+kktLvfy grapkgekt+Wvmheyrle
  EcC031547.30 108 RLVGMKKTLVFYMGRAPKGEKTNWVMHEYRLE 139
                   ******************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-5112163IPR003441NAC domain
PROSITE profilePS5100545.12720163IPR003441NAC domain
PfamPF023651.4E-2521138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010229Biological Processinflorescence development
GO:0045454Biological Processcell redox homeostasis
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003677Molecular FunctionDNA binding
GO:0030626Molecular FunctionU12 snRNA binding
GO:0097157Molecular Functionpre-mRNA intronic binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MEEEGMVVNQ GREHQELMDL PPGFRFHPTD EEIITHYLTP KVLNSSFSAS AVSEVDLNNE  60
SQDGRERVVL FCQKDRKYPT GTRTNRATES GYWKATGKDK EIYRGRGRLV GMKKTLVFYM  120
GRAPKGEKTN WVMHEYRLEG KMAYYNLSRA AKDEWVVSRV FHKSTGVKKD PSPGPLTRIN  180
SYVDDFLDMS SPPPPLIDAP SSSRPSSSFT DGENELKGVI NSGPRALDGN GSYFYFPADS  240
TDNQNQVLLQ EQGDRMNYCH VMNPSIDASH CPPQSNHPPL FPSHGSTNPE EYLHQGRSDV  300
GSSFGGTGFS CGSTDPALLR AIRANFGASN PQNNNQCKVE QFSSNHSMVS LSQDTGLSTD  360
VNNEISSVPI SKQEVGSCDA FEDLEGLSSV GPIQDFGFWD Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-401816915171NO APICAL MERISTEM PROTEIN
1ut4_B2e-401816915171NO APICAL MERISTEM PROTEIN
1ut7_A2e-401816915171NO APICAL MERISTEM PROTEIN
1ut7_B2e-401816915171NO APICAL MERISTEM PROTEIN
4dul_A2e-401816915171NAC domain-containing protein 19
4dul_B2e-401816915171NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010054347.10.0PREDICTED: NAC domain-containing protein 92
TrEMBLA0A059DHW70.0A0A059DHW7_EUCGR; Uncharacterized protein
STRINGXP_010054347.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.12e-86NAC domain containing protein 46