PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC030106.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 228aa    MW: 26339.8 Da    PI: 5.4264
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC030106.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2193.8e-062146123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                  + Cp  dCgk++ + + Lk+Hi + H
  EcC030106.10 21 HICPypDCGKRYAHEYKLKNHIASqH 46
                  679999****************9988 PP
2zf-C2H215.93.8e-0585110123
                   EEET..TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                   y Cp   C+k + + + Lk H+r+ H
  EcC030106.10  85 YACPyeTCDKAYIHEYKLKLHLRReH 110
                   89**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.44E-9147No hitNo description
Gene3DG3DSA:3.30.160.601.1E-10744IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0032146IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.7252151IPR007087Zinc finger, C2H2
PROSITE patternPS0002802346IPR007087Zinc finger, C2H2
SuperFamilySSF576674.68E-680109No hitNo description
Gene3DG3DSA:3.30.160.601.9E-880107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.03985110IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.18285110IPR007087Zinc finger, C2H2
PROSITE patternPS00028087110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
AFSLDFNLRS HMKTHSQENY HICPYPDCGK RYAHEYKLKN HIASQHEKNA AVEVAKYTPP  60
PEKITTKASK PSSGAYGLAS SDRPYACPYE TCDKAYIHEY KLKLHLRREH PEYMADENAE  120
NATRNVDHEM DEASDQDNYS RKRANGKSQK QSRQKVNLKT PPAKPAKRKG AASPTPVTLN  180
VVKKPWPVKE DIYEEEDSEE TEEDQENVEG WRYAENNEDD DEETEYED
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065348.11e-165PREDICTED: uncharacterized zinc finger protein At4g06634 isoform X2
SwissprotQ2V3L31e-71YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A059B9Q31e-163A0A059B9Q3_EUCGR; Uncharacterized protein
STRINGXP_010065347.11e-163(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58592846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.24e-66C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]