PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC029620.30

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 322aa MW: 36190.2 Da PI: 9.2409

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC029620.30	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21	8.7e-07	168	187	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r nL+ H+ EcC029620.30 168 FSCPVCQKTFNRYNNLQMHM 187 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.17E-6	161	191	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.4E-6	168	187	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.97	168	195	IPR007087	Zinc finger, C2H2
Pfam	PF12874	2.0E-4	168	187	No hit	No description
SMART	SM00355	0.028	168	190	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	170	190	IPR007087	Zinc finger, C2H2
SMART	SM00355	180	265	286	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
PCCIFPDIAP PAVRMRDPYS NSVLQWSNSM FLPLQPRYSQ PFSYFSSSNL VTGAHCQTSA 60 SSPPFEALPL INRLGLHMPD EPSPSHGSSK QDESLFLQKA DADRDNDNGV TVALQIGLPV 120 TPCPAPELKK EETTVDAADA IRCRLDKLRQ GHYWIPTPKE ILAGPQQFSC PVCQKTFNRY 180 NNLQMHMWGH GSEYRKGPES LKGTGSTKAR AQESNDGLML QRIPCYCCAP GCKHNIRHPR 240 ARPLKDFRTL QTHFKRRHGY GSKPFTCRKC SNKSFAVKGD WRTHEKNCGK IWYCVCGSDF 300 KHKRSLNDHV RAFGLGHAPS FA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010032420.1	0.0	PREDICTED: zinc finger protein WIP2
Swissprot	Q8W031	4e-94	ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBL	A0A059ACJ6	0.0	A0A059ACJ6_EUCGR; Uncharacterized protein
STRING	XP_010032420.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51220.1	2e-96	WIP domain protein 5

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610]