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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC029179.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | WRKY | ||||||||
Protein Properties | Length: 311aa MW: 34382.7 Da PI: 9.5012 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.8 | 3.1e-30 | 151 | 209 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 ++Dgy+WrKYGqK+ ++++ pr+YYrC++a +Cpvkkkv+rs +dp+v++ tYegeHnh EcC029179.10 151 VKDGYQWRKYGQKVTRDNPSPRAYYRCSFApTCPVKKKVQRSVHDPSVLVATYEGEHNH 209 58***************************99**************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 27.209 | 146 | 212 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.4E-29 | 146 | 212 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-25 | 150 | 212 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-34 | 151 | 211 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.7E-25 | 152 | 209 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MGSNWIVDTS LELNTSYPKK EIVLENDNSR RGRPEEPVIK HEPSHKPPSV TSGEITPDAT 60 LNLPHTTQRF SLSASQGFRT LASSNQLIVL ENKTSDGELG ASRKRKHEAN ITAESCSYEE 120 DRICKKPKDI FKPMITKLHF QTDVSDMSLV VKDGYQWRKY GQKVTRDNPS PRAYYRCSFA 180 PTCPVKKKVQ RSVHDPSVLV ATYEGEHNHL SPSQPAIPLG SNKQGLNQGT HPIPSPSKSR 240 SSSPRSTPDL IRLGCDTLSA KTGQEEEVTA AFQQFLVQQM ASSLKTDPNF TAALAAAISG 300 KLVDQARIGK W |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-21 | 150 | 212 | 13 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010050822.1 | 1e-134 | PREDICTED: probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 6e-58 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A059CRL5 | 1e-113 | A0A059CRL5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010050822.1 | 1e-133 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2477 | 28 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31800.2 | 8e-57 | WRKY DNA-binding protein 18 |