PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC028922.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 354aa    MW: 40325 Da    PI: 5.205
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC028922.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.6e-16111157148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT++Ed ll ++v+q+G+ +W+ ++++++ gR +kqc++rw+++l
     EcC028922.20 111 KGQWTAQEDGLLTQLVEQFGMSRWSYVSQMLP-GRLGKQCRERWHNHL 157
                      799*****************************.*************97 PP
2Myb_DNA-binding56.46.9e-18163205145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +  WT+eE++++++a+++ G++ W+ Ia++++ +Rt +++k++w+
     EcC028922.20 163 KETWTEEEEKIIIQAHTEIGNK-WSEIAKRLP-NRTQNSIKNHWN 205
                      578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.902106157IPR017930Myb domain
SuperFamilySSF466891.09E-29110204IPR009057Homeodomain-like
SMARTSM007178.8E-13110159IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-27112164IPR009057Homeodomain-like
CDDcd001676.58E-12114157No hitNo description
PfamPF139212.4E-16114171No hitNo description
PROSITE profilePS5129425.078158212IPR017930Myb domain
SMARTSM007171.8E-15162210IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-21165211IPR009057Homeodomain-like
CDDcd001672.93E-6173208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006820Biological Processanion transport
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0005215Molecular Functiontransporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MFRPSDVYLH STSANFDLLF QCKQFTDGQG VVMDNFEVGG IDTASKYDKS HMFFDFQQNV  60
DPVNFVASGE VSRTSDEYGY CKNNFTSMNK EVSSLSARRT CEVCKRSQAS KGQWTAQEDG  120
LLTQLVEQFG MSRWSYVSQM LPGRLGKQCR ERWHNHLRPN IKKETWTEEE EKIIIQAHTE  180
IGNKWSEIAK RLPNRTQNSI KNHWNATKRR QFTKRKRRSK YPRASPLQEY IQSLNLSASK  240
RFPLQSSGGD RATAVNNDAS RNKSASSTDD RLVQNIIKFG ELPEQLFDEK LLQEGCALDS  300
LLEDLPCPPD ATVEDGGGGG EELGMEMLDM DSLLESEEPN EDLDLVEMIT QIYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-421112114104C-Myb DNA-Binding Domain
1msf_C3e-421112114104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207216KRRQFTKRKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045548.10.0PREDICTED: transcription factor MYB98
SwissprotQ9S7L22e-78MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A059CYD40.0A0A059CYD4_EUCGR; Uncharacterized protein
STRINGXP_010045548.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.14e-60myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]