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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC028520.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | WRKY | ||||||||
Protein Properties | Length: 140aa MW: 15418.6 Da PI: 10.1175 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.4 | 1.1e-31 | 68 | 125 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp ++++tYegeHnh+ EcC028520.10 68 DDFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPGMLIVTYEGEHNHS 125 99************************988****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 6.2E-17 | 19 | 64 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-33 | 54 | 126 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.228 | 61 | 127 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-27 | 64 | 126 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-38 | 66 | 126 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.2E-27 | 68 | 124 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
HHLSQVSSAD KPPLSYSLKR KCSSMDDAAL KCGSSSGKCH CSNKRKSRLK RVVRVPAVSS 60 KMADIPPDDF SWRKYGQKPI KGSPHPRGYY KCSSVRGCPA RKHVERALDD PGMLIVTYEG 120 EHNHSQSVAD VKAPLVLESS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-22 | 54 | 124 | 2 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010059897.1 | 4e-96 | PREDICTED: probable WRKY transcription factor 7 | ||||
Swissprot | O22176 | 1e-58 | WRK15_ARATH; Probable WRKY transcription factor 15 | ||||
Swissprot | Q9STX0 | 1e-58 | WRKY7_ARATH; Probable WRKY transcription factor 7 | ||||
TrEMBL | A0A059BJH6 | 7e-94 | A0A059BJH6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010059897.1 | 2e-95 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1715 | 28 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23320.1 | 2e-45 | WRKY DNA-binding protein 15 |
Publications ? help Back to Top | |||
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