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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC027683.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 236aa MW: 26079.2 Da PI: 6.3719 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50.9 | 2e-16 | 23 | 64 | 4 | 45 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 en r vtf+kRr+g++ K EL++LC++ev +i fs+ k EcC027683.20 23 ENVDDRRVTFTKRRTGLFEKGAELCILCGVEVVIITFSEGKK 64 78889*********************************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.007 | 12 | 72 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.8E-22 | 12 | 71 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.01E-21 | 13 | 82 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-15 | 14 | 34 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.9E-16 | 23 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-15 | 34 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-15 | 49 | 70 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MASGNNSKKA TKGRQKIEIK KRENVDDRRV TFTKRRTGLF EKGAELCILC GVEVVIITFS 60 EGKKAFCFGH PEADRILQGY LDGAAGINPT GSGDSGCRGK EGEGGSGDNA AYLQTTRESK 120 QRYFEAVERL EKEKADLKLM QETGRAESGG FWWEQPIEHL GLEELEYFHQ SLEKLAGKVL 180 MKLDPGRHQD SELDPGRSQD SALALQHDVA TGDGWFAQDP SSSWPLPLGK NSRGQF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018732145.1 | 4e-84 | PREDICTED: agamous-like MADS-box protein AGL62 isoform X1 | ||||
Refseq | XP_018732146.1 | 4e-84 | PREDICTED: agamous-like MADS-box protein AGL62 isoform X2 | ||||
Refseq | XP_018732147.1 | 4e-84 | PREDICTED: agamous-like MADS-box protein AGL62 isoform X3 | ||||
TrEMBL | A0A218X933 | 1e-52 | A0A218X933_PUNGR; Uncharacterized protein | ||||
STRING | XP_010064880.1 | 5e-80 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-31 | AGAMOUS-like 62 |