PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC027222.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | bHLH | ||||||||
Protein Properties | Length: 117aa MW: 12805.9 Da PI: 9.2246 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.9 | 0.00021 | 1 | 21 | 8 | 28 |
HHHHHHHHHHHHHHHHHCTSC CS HLH 8 rErrRRdriNsafeeLrellP 28 +Er+RR r++ f++L +l+ EcC027222.10 1 MERNRRIRMKGLFSKLDSLMD 21 6***************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.22E-5 | 1 | 59 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MERNRRIRMK GLFSKLDSLM DMLSQQDAAI QATVAHINQV KEKVDGLKMR KELAMRSNGR 60 QPGALVSGLE VTLISGVDKN SVLSEAISIL KEEGAEAVCA SVSIVGDKVF HTFYAQV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002279841.1 | 1e-29 | PREDICTED: uncharacterized protein LOC100253569 isoform X1 | ||||
TrEMBL | A0A218VZD6 | 3e-33 | A0A218VZD6_PUNGR; Uncharacterized protein | ||||
STRING | VIT_17s0000g08150.t01 | 4e-29 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1278 | 25 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10586.1 | 1e-09 | bHLH family protein |