PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC025730.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 308aa    MW: 34181.4 Da    PI: 8.1532
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC025730.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.33.8e-33622021128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......s 80 
                   lp G++F+P+d+e++ e+L++k++++       +   +    +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++      +
  EcC025730.20  62 LPSGVKFDPNDQEIL-EHLEAKAAADArkmhplI---DefipTLEGEnGICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGTRKRRKVHgdtdggE 153
                   699***********9.99***9998884554332...132222333336**********.566677888******************8444444446 PP

           NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                    +W++tgk+++vl  +g++ g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  EcC025730.20 154 TRWHKTGKTRPVLI-GGAVRGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 202
                   67************.9*************66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-3555216IPR003441NAC domain
PROSITE profilePS5100531.38962221IPR003441NAC domain
PfamPF023652.5E-1463202IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
IMTWCNNSDP EGKAIQIVAG DASRGNCIID PQGSAVRTVT CPSCGHNIEL LDQGMIHDLP  60
GLPSGVKFDP NDQEILEHLE AKAAADARKM HPLIDEFIPT LEGENGICYT HPEKLPGVSK  120
DGQVRHFFHR PSKAYTTGTR KRRKVHGDTD GGETRWHKTG KTRPVLIGGA VRGFKKILVL  180
YTNYGRQRKP EKTNWVMHQY HLGDNEEEKD GELVMSKPRQ CGASVRDPSV DKRYTKEHQV  240
LHGTSVVDYY NYGNPNFISN YDQVNPNRES PPQLIPNLVV QGDGSSFIQF TADASKGKLV  300
RNRDGGGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-116220215140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010057358.10.0PREDICTED: NAC domain-containing protein 73
SwissprotO494591e-111NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A059C9B10.0A0A059C9B1_EUCGR; Uncharacterized protein
STRINGXP_010057358.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-114NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]