PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC023395.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 292aa    MW: 32300.7 Da    PI: 5.1759
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC023395.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.80.000225976219
                  HHHHHHHHHHHHHHHHHH CS
           HLH  2 rrahnerErrRRdriNsa 19
                  r +h+e E+rRR++iN++
  EcC023395.20 59 RSKHSETEQRRRSKINER 76
                  899*************86 PP
2HLH27.27.2e-091081401955
                   HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +f+ Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  EcC023395.20 108 WFQILRDLIPQN----DQKRDKASFLLEVIEYIQFLQ 140
                   8**********9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.02357139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-185775IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.15E-1259144No hitNo description
SMARTSM003530.005463145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-6108140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-18108160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-10108160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MVRPAAKTPH HHHHHEQHDD DDDEETEYGD DFAPAHNSNS SFPKEEAGKG DGKRGSAPRS  60
KHSETEQRRR SKINERQALV VPVKLPLSCS VLLCGVEVSV KSVDGWVWFQ ILRDLIPQND  120
QKRDKASFLL EVIEYIQFLQ EKLQMYEGSY PGYDQEPSKL TPWRSNTGTV ESQMDHLQIM  180
KNGSAHESRV VMNPLLANAQ NSLESDLGNA AVSIDMQTQP GMYASVGHGG VASEPLTEAV  240
SNVGNVSGHP QSQLWQAMPF AADCSIPNNT HIDQEQFTIE SGSVSLSAAY SQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029419.11e-167PREDICTED: transcription factor BIM2 isoform X1
TrEMBLA0A059ARC91e-161A0A059ARC9_EUCGR; Uncharacterized protein
TrEMBLA0A059ASE31e-162A0A059ASE3_EUCGR; Uncharacterized protein
STRINGXP_010029419.11e-166(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.14e-40BES1-interacting Myc-like protein 2