PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC023190.70
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 551aa    MW: 60037 Da    PI: 6.794
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC023190.70genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.81.1e-09367414455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  EcC023190.70 367 SHSLAERVRREKISERMKILQDLVPGC----NKAIGKAVMLDEIINYVQSLQ 414
                   8*************************9....888*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-17361430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.83E-10361418No hitNo description
Gene3DG3DSA:4.10.280.109.9E-17363426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.688363413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-7367414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-11369419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0006457Biological Processprotein folding
GO:0055114Biological Processoxidation-reduction process
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005840Cellular Componentribosome
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0046577Molecular Functionlong-chain-alcohol oxidase activity
GO:0046983Molecular Functionprotein dimerization activity
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MDAQCAEMNC FYNPSWEKST VDHGVAKFDS ALSAIGSSPA GSTSNSNLSN GSFVMRDLVG  60
KLVGVGNSSE LPPHSHHVFS AMPAKADSHV GGDNSTGNSC YSTPVNSPPM TDRLFQDNHH  120
LPKLGHAVMP MNSGLAEFSP DPGFADRAAR YSCFGSRSFN GRSGQFSRKY GEIVNRSMPP  180
MADEKLTRVS SGPSLKALES QMAAEQSKNS PPQDRGELSN SQEGSSLSEQ IPSVEIGLRA  240
SNDAGLRKRK AVPKGKAKGS AGTLPSSNDA KVMKLKNSDA HGNVSIVYIH ELFVEVGKLP  300
FQVDEANEKS DAKRCKPDES AGNENCSGKA EHDPKESTGT ASEDKQTKTE EKDYIHVRAR  360
RGQATDSHSL AERVRREKIS ERMKILQDLV PGCNKAIGKA VMLDEIINYV QSLQHQVEFL  420
SMKLASVNSG PDYKMDALMS KEMFRSNDQI QYPILPPDSS AASVLYGHHR HQKNSAVHNH  480
ITEGTTAQFS MDPLNEPHFP PLDGLNDHVL ASFCGDDLQM LVQMGFGQDK LTEAPLDHQD  540
YHHGMRKKCE I
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010069612.10.0PREDICTED: transcription factor bHLH62
TrEMBLA0A059AWA10.0A0A059AWA1_EUCGR; Uncharacterized protein
STRINGXP_010069612.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.11e-66bHLH family protein