PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC022678.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 311aa    MW: 35061.1 Da    PI: 8.3873
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC022678.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.5e-092671346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+eE +++ ++ + + ++   +W+++a+ ++ g+t  ++   ++ 
     EcC022678.10 26 KWTPEENKQFENLLAVYDKDtpdRWAKVAASIP-GKTVGDVMKQYRE 71
                     8********************************.****999998875 PP
2Myb_DNA-binding46.86.7e-15134178347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ I+r++ + Rt+ q+ s+ qky
     EcC022678.10 134 PWTEEEHRQFLMGLKKYGKGDWRNISRYFVTSRTPTQVASHAQKY 178
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.4E-62072IPR009057Homeodomain-like
PROSITE profilePS512937.8872277IPR017884SANT domain
SMARTSM007172.0E-102375IPR001005SANT/Myb domain
SuperFamilySSF466891.17E-112579IPR009057Homeodomain-like
CDDcd001673.06E-82672No hitNo description
PfamPF002491.5E-72671IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-12125179IPR009057Homeodomain-like
PROSITE profilePS5129419.092127183IPR017930Myb domain
SuperFamilySSF466891.04E-17129182IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-17130182IPR006447Myb domain, plants
SMARTSM007172.3E-13131181IPR001005SANT/Myb domain
PfamPF002493.2E-12134178IPR001005SANT/Myb domain
CDDcd001671.70E-11134179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006457Biological Processprotein folding
GO:0003677Molecular FunctionDNA binding
GO:0016747Molecular Functiontransferase activity, transferring acyl groups other than amino-acyl groups
GO:0051082Molecular Functionunfolded protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MNRGIEILSP YLQNSNWLFQ ESKGTKWTPE ENKQFENLLA VYDKDTPDRW AKVAASIPGK  60
TVGDVMKQYR ELEEDVSDIE AGLIPIPGYG GNSFTLEWIN SNNGSDGLKQ LYSTVGKRGT  120
STKPSDQERK KGVPWTEEEH RQFLMGLKKY GKGDWRNISR YFVTSRTPTQ VASHAQKYFI  180
RQGTGGKDKR RSSIHDITTV HLPDSDPPSP VKRQSASPDN SSTITKLPVQ AQPHDHHPKI  240
EEMSTDILCW NNQSNGGLAT AYDQVGVDAA LGPFRGISSY GNKLHEQRFL MSGLHGAQFD  300
PYFQMQPMHY Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-172497884RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044094.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H72e-99DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A059D6J40.0A0A059D6J4_EUCGR; Uncharacterized protein
STRINGXP_010044094.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-114MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]