PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

EcC022141.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

HSF

Protein Properties

Length: 71aa MW: 8094.25 Da PI: 4.5639

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC022141.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	25.9	2.6e-08	37	70	2	35
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHH CS HSF_DNA-bind 2 Flkklyeiledeelkeliswsengnsfvvldeee 35 Fl+k+y +++d+++++lisw+++g++f+ + e EcC022141.10 37 FLMKTYMLMNDPSVDDLISWNKDGTTFIAWRLAE 70 9***************************998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.5E-7	30	69	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.1E-6	35	67	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	8.0E-5	37	67	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 71 aa Download sequence Send to blast
LRVSWGLEFE RHPWGPMPAE QTGDSPVVGA SQRSLPFLMK TYMLMNDPSV DDLISWNKDG 60 TTFIAWRLAE L

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010055608.2	3e-21	PREDICTED: heat stress transcription factor B-2b
TrEMBL	A0A059C1N5	7e-20	A0A059C1N5_EUCGR; Uncharacterized protein
STRING	XP_010055608.1	2e-20	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM965	28	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11660.1	5e-14	HSF family protein