PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC021999.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 517aa    MW: 59236.1 Da    PI: 9.576
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC021999.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.1e-09425465346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       WT+eE el  + ++q+G++ W+t a  +g  R + ++k+ w+ 
     EcC021999.20 425 TWTPEECELVRKFHEQHGSN-WRTLADALG--RHRFHVKDTWRR 465
                      6*****************99.********8..999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-4349413IPR009057Homeodomain-like
SMARTSM007171.5E-5349420IPR001005SANT/Myb domain
PROSITE profilePS500904.275352413IPR017877Myb-like domain
PROSITE profilePS500907.015418467IPR017877Myb-like domain
SMARTSM007170.0013422469IPR001005SANT/Myb domain
SuperFamilySSF466895.35E-8423483IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-9425483IPR009057Homeodomain-like
PfamPF139211.7E-11426483No hitNo description
PROSITE profilePS500904.519471517IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MGGKKEKRGR REEDRVGVAM GVDRREVDAG DGVENGVDKV DRDKKKGKTK REVLGDGSEF  60
VEEYGKGSVG DENEGGRSEK KKKKRKREVG RDEKELEKAV KKGSTLSEGN ESGGGKSVSE  120
VPQIVEDGDG HMHDGDFENM EERLQIQTKK KKNKKHKDFK KMDDVDAAFS ATKHLADDRH  180
EAGVQEQNKS LGKNIEEIKD TDEGGIKKKK KKKGRRDSDP VGDNQKKEEA SRSSDAEIVK  240
KDIREKERSK RKKQKRIEEQ GHVASGNLDK EYMESEADAR FTNDNMGSEE KKPIKDRKRK  300
KDKAAKDGIE GKDRKKKAKR VSFAENVEVF PPSDGLSEED NSKDGNLVRG KKFSKEEDEL  360
VKEAVYNYIE AHNLGEDGLK MVLNCGSHPE ARNCWKEIGA YLPWRPNESV YHRAHLLFER  420
SENRTWTPEE CELVRKFHEQ HGSNWRTLAD ALGRHRFHVK DTWRRIKFPY KKGPWSQDEY  480
QQLFDLVNMD LRMKASEERK SKHGMLLDNI AWGAISD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18085KKKKRK
2206212KKKKKKK
3207215KKKKKKGRR
4243252REKERSKRKK
5296300RKRKK
6296301RKRKKD
7296302RKRKKDK
8298316RKKDKAAKDGIEGKDRKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010023479.10.0PREDICTED: transcription termination factor 1
TrEMBLA0A059B0K00.0A0A059B0K0_EUCGR; Uncharacterized protein
STRINGXP_010023479.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.12e-71MYB_related family protein