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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC021915.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | DBB | ||||||||
Protein Properties | Length: 157aa MW: 17512.7 Da PI: 7.0694 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 16.2 | 2.2e-05 | 2 | 34 | 3 | 35 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHk 35 e++C+ + + ++C+ + lC +C + H+ EcC021915.10 2 EKVCEFCRALRPVIYCQADAAQLCLSCDAKVHS 34 679******99*****************99995 PP | |||||||
2 | zf-B_box | 16.2 | 2.3e-05 | 47 | 86 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg...Htvvp 41 C+ ++ ++ +C d + ++C++C +H g H+++ EcC021915.10 47 LCDSCQYRPAYVHCLDHKLYICRNCDRRIHDGscqHRTQA 86 7*****************************8799999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 7.2E-6 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.987 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 0.00121 | 4 | 35 | No hit | No description |
PROSITE profile | PS50119 | 8.887 | 43 | 87 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 0.001 | 47 | 76 | No hit | No description |
SMART | SM00336 | 0.15 | 48 | 87 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MEKVCEFCRA LRPVIYCQAD AAQLCLSCDA KVHSANALSS RHLRSLLCDS CQYRPAYVHC 60 LDHKLYICRN CDRRIHDGSC QHRTQAIYSY MGSPSANDFA ELWDLDLSQL GNLACTGPSD 120 SSSHEFVDLG TITVDTSGSV YPGECNVGSR NREKKLR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018724530.1 | 1e-109 | PREDICTED: putative zinc finger protein At1g68190 isoform X2 | ||||
Swissprot | Q9C9F4 | 4e-37 | COLX_ARATH; Putative zinc finger protein At1g68190 | ||||
TrEMBL | A0A059D6D5 | 1e-108 | A0A059D6D5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010044125.1 | 1e-109 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8320 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 1e-30 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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