PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC020645.50

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB

Protein Properties

Length: 307aa MW: 34645.4 Da PI: 4.857

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC020645.50	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.1	1.7e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++l d+vk++G g W++ +r+ g++R++k+c++rw +yl EcC020645.50 14 KGAWTAAEDQILMDYVKLHGEGKWSRLSRETGLRRCGKSCRLRWMNYL 61 79********************************************97 PP
2	Myb_DNA-binding	53.2	6.7e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ EcC020645.50 67 RGNISPDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111 7899****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.993	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	1.61E-29	12	108	IPR009057	Homeodomain-like
SMART	SM00717	9.0E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	4.2E-15	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-23	15	68	IPR009057	Homeodomain-like
CDD	cd00167	4.08E-11	16	61	No hit	No description
SMART	SM00717	3.6E-16	66	114	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	19.613	66	116	IPR017930	Myb domain
Pfam	PF00249	4.1E-15	67	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-24	69	115	IPR009057	Homeodomain-like
CDD	cd00167	1.19E-12	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MGRSPRCDKD GLNKGAWTAA EDQILMDYVK LHGEGKWSRL SRETGLRRCG KSCRLRWMNY 60 LRPDIKRGNI SPDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLAKKPEALR 120 SIQFHQLHRE PMVEPPATSQ QELAQQRVPE SNIRGVANPE PQVGQQNAAN GEMRSSPDGN 180 YLLKQMLSDS DMSDGSLSFN SEEESPDFMI DFNVDDISQF LDSDFYKLGP DQNGYSHDGE 240 RDSKCPPYLN QQLVPPEEAG KDLDNSLRIR DDSVSAFQSL ASLFESDDEK WTGGGDKADF 300 ALPGKNG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-26	12	115	25	127	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:18541146, ECO:0000269\|PubMed:9839469}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010048454.1	0.0	PREDICTED: transcription factor MYB90
Swissprot	Q9S9K9	8e-59	MYB3_ARATH; Transcription factor MYB3
TrEMBL	A0A059CR51	0.0	A0A059CR51_EUCGR; Uncharacterized protein
STRING	XP_010048454.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	4e-61	myb domain protein 3

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou M, et al. Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis. Plant J., 2015. 84(2): p. 395-403 [PMID:26332741] Wada T,Hayashi N,Tominaga-Wada R Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis. Plant Signal Behav, 2015. 10(11): p. e1089372 [PMID:26339713] Wada T,Tominaga-Wada R CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression. Plant Sci., 2015. 241: p. 260-5 [PMID:26706076] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Zhou M, et al. LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis. Plant Physiol., 2017. 174(3): p. 1348-1358 [PMID:28483877] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]