PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC020645.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 678aa MW: 79035.1 Da PI: 7.6224

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC020645.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.2	5.8e-23	62	146	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ke GF +r+s+s +++ +e +++++ Cs g++++++ + ++r+etrtgC a++++++ ++++w + +++leHnH ++ EcC020645.20 62 DFYNMYGKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMIVIRLVDSNRWSIVEVQLEHNHRVS 146 6*******************999*************99888.....9********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.9E-21	62	147	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.8E-27	269	361	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.446	554	590	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.1E-4	554	587	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-6	565	592	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 678 aa Download sequence Send to blast
MFEMEEVHLN SEPLFDDGNK YEFEEDANAM DSGGEVSDAP PLKGHTPPTV GLEFDSFDQA 60 YDFYNMYGKE QGFGIRVSNS WFRSKRKERY RAKLSCSSAG FKKKSEANNP RPETRTGCPA 120 MIVIRLVDSN RWSIVEVQLE HNHRVSPEIK RFYKSHKKMI IAAKKTQPPS KPVMHMHVIK 180 LYQPAAINSG SNGYLSISRG DGIDSIDHAK YLELKEGDAH ALYNYFCRMK LTNPNFFYLM 240 DVDDDGRLRN VFWADARSRA DYAYFSDTVA VDSMCLANKF EIPLISFIGI NHHGQSVLLG 300 CGFIGHESVE HFVWMFRAWL KCMLDHPPQV IFTDQSKAFQ SAISEVFPKA HHCFCAWYIM 360 QRLHEKLGGL KGYEVIKRQL KRSVFNSLKL AEFETSWADM IHRHGLQDNK WLQSLYEDRQ 420 MWVPVYLKDT FFAGMILIQE SESKSAFFDG YVHKHTSFKE FVDKYDLVLH RKHLKEAMAE 480 LESRNLNCEL KTRCNFEVQL ARVYTKEIFK RFQSEVEGMY SCFNTRQINV NGTIITYIVK 540 ERVLTGKEKE VRNYEVLYET SQVDIRCICS LFNYKGYLCR HALNVLNYNG VEEIPRQYIL 600 SRWSKDCKRQ PLEIPRGSND VDVHNPVWWH NNLYRRAIPI VEQGARSKDH YKITLHELEE 660 LLTKLDLVED NLSAPENV

Sequence ? help Back to Top

Protein Sequence Length: 678 aa Download sequence Send to blast

MFEMEEVHLN SEPLFDDGNK YEFEEDANAM DSGGEVSDAP PLKGHTPPTV GLEFDSFDQA  60
YDFYNMYGKE QGFGIRVSNS WFRSKRKERY RAKLSCSSAG FKKKSEANNP RPETRTGCPA  120
MIVIRLVDSN RWSIVEVQLE HNHRVSPEIK RFYKSHKKMI IAAKKTQPPS KPVMHMHVIK  180
LYQPAAINSG SNGYLSISRG DGIDSIDHAK YLELKEGDAH ALYNYFCRMK LTNPNFFYLM  240
DVDDDGRLRN VFWADARSRA DYAYFSDTVA VDSMCLANKF EIPLISFIGI NHHGQSVLLG  300
CGFIGHESVE HFVWMFRAWL KCMLDHPPQV IFTDQSKAFQ SAISEVFPKA HHCFCAWYIM  360
QRLHEKLGGL KGYEVIKRQL KRSVFNSLKL AEFETSWADM IHRHGLQDNK WLQSLYEDRQ  420
MWVPVYLKDT FFAGMILIQE SESKSAFFDG YVHKHTSFKE FVDKYDLVLH RKHLKEAMAE  480
LESRNLNCEL KTRCNFEVQL ARVYTKEIFK RFQSEVEGMY SCFNTRQINV NGTIITYIVK  540
ERVLTGKEKE VRNYEVLYET SQVDIRCICS LFNYKGYLCR HALNVLNYNG VEEIPRQYIL  600
SRWSKDCKRQ PLEIPRGSND VDVHNPVWWH NNLYRRAIPI VEQGARSKDH YKITLHELEE  660
LLTKLDLVED NLSAPENV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010048456.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Refseq	XP_018726447.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Refseq	XP_018726448.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A059CR76	0.0	A0A059CR76_EUCGR; Uncharacterized protein
STRING	XP_010048456.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10788	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]