PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC020604.60
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 350aa    MW: 39268.8 Da    PI: 9.1592
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC020604.60genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.9e-185096148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +lv +vkq+G + W+ Ia+++  gR +kqc++rw+++l
     EcC020604.60 50 KGQWTEEEDRKLVSLVKQYGVRKWAQIAEKLA-GRAGKQCRERWHNHL 96
                     799*****************************.*************97 PP
2Myb_DNA-binding56.46.7e-18102144145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++eE+ +lv+a+++ G++ W+ Ia++++ gRt++ +k++w+
     EcC020604.60 102 KDSWSEEEERILVEAHEEVGNR-WAEIAKRIP-GRTENAIKNHWN 144
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.84245100IPR017930Myb domain
SuperFamilySSF466898.63E-3148143IPR009057Homeodomain-like
SMARTSM007173.0E-174998IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2851103IPR009057Homeodomain-like
CDDcd001673.73E-155396No hitNo description
PfamPF139214.4E-2053110No hitNo description
SMARTSM007171.7E-17101149IPR001005SANT/Myb domain
PROSITE profilePS5129421.398101151IPR017930Myb domain
CDDcd001674.35E-13104147No hitNo description
Gene3DG3DSA:1.10.10.602.3E-21104149IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
RFLWEHWVVV NEPNPREGAR DDRVVKVMGK SKKLATGKRV KRGSHATLIK GQWTEEEDRK  60
LVSLVKQYGV RKWAQIAEKL AGRAGKQCRE RWHNHLRPDI KKDSWSEEEE RILVEAHEEV  120
GNRWAEIAKR IPGRTENAIK NHWNATKRRQ NSRRPHSSVL EDYIRSKNLH NAAVTTEAQA  180
KKAGPGPTEC NDPPKQPFHF FLPELSETYD DEVRFMQKFF PASNYGDSRL QLGDVTGKDG  240
LIERPNAVVH TDNVIEVAGN QASPATNTKS LLMNNPDLYL SSLLNGVDYH SSCSSSNSLG  300
YHPGYGYGYG YNGASGGTAV ANDQALTPYG GREMDLIEMV SSSQVSQGSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-46481505107B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034582.10.0PREDICTED: myb-related protein A
TrEMBLA0A059AFM81e-142A0A059AFM8_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010034582.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.13e-69myb domain protein 119