PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC019247.60
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 290aa    MW: 32478.2 Da    PI: 8.9466
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC019247.60genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM91.81.1e-28199254128
           NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                   +e+ew+fFs r +ky++g++++rat++gyWkatgk+++v+s +++++g+k+tLvf+ grapkg++t+W+mhey++
  EcC019247.60  19 SESEWFFFSVRGRKYPKGSQSKRATEHGYWKATGKERNVKS-SSAVIGTKRTLVFHLGRAPKGKRTEWIMHEYSM 92 
                   578**************************************.999****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100534.5221111IPR003441NAC domain
SuperFamilySSF1019411.07E-3218110IPR003441NAC domain
PfamPF023659.3E-142291IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0009913Biological Processepidermal cell differentiation
GO:0043622Biological Processcortical microtubule organization
GO:0055114Biological Processoxidation-reduction process
GO:0055028Cellular Componentcortical microtubule
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
VCFVEVGCFM ISAKSIVPSE SEWFFFSVRG RKYPKGSQSK RATEHGYWKA TGKERNVKSS  60
SAVIGTKRTL VFHLGRAPKG KRTEWIMHEY SMNAKSQNQQ DSLVICRLRR SSQFQMGGAS  120
DLTQTSDVDR TDVSEGDNLA DGCARNCSGS YNSHSVEQIE SSSNSSHQKN SDGNEDFYAD  180
ILKDDIVKLD ESSVSPTRDS LPTVPNNLEA ELMSQDSQTL VQDFISPIPP FQGTANRRIR  240
LRRHKPERSS KIVLEMKAND SSAEKAEPQT GISGPSERRT RVIISRWLVY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-241911069164NO APICAL MERISTEM PROTEIN
1ut4_B3e-241911069164NO APICAL MERISTEM PROTEIN
1ut7_A3e-241911069164NO APICAL MERISTEM PROTEIN
1ut7_B3e-241911069164NO APICAL MERISTEM PROTEIN
3swm_A2e-241911072167NAC domain-containing protein 19
3swm_B2e-241911072167NAC domain-containing protein 19
3swm_C2e-241911072167NAC domain-containing protein 19
3swm_D2e-241911072167NAC domain-containing protein 19
3swp_A2e-241911072167NAC domain-containing protein 19
3swp_B2e-241911072167NAC domain-containing protein 19
3swp_C2e-241911072167NAC domain-containing protein 19
3swp_D2e-241911072167NAC domain-containing protein 19
4dul_A3e-241911069164NAC domain-containing protein 19
4dul_B3e-241911069164NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcription factor involved in modulation of abscisic acid (ABA) signaling. Attenuates ABA sensitivity and glucose-induced ABA accumulation. Reduces the expression of ABI4 gene. {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:24625790}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By glucose (PubMed:24625790). Induced by salt, drought stress and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:24625790}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045181.10.0PREDICTED: NAC domain-containing protein 60
SwissprotQ9LXL92e-56NAC60_ARATH; NAC domain-containing protein 60
TrEMBLA0A059D9S10.0A0A059D9S1_EUCGR; Uncharacterized protein
STRINGXP_010045181.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44290.16e-54NAC domain containing protein 60
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]