PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC018596.80
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 597aa    MW: 65559.8 Da    PI: 6.9135
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC018596.80genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.2e-08484532348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v ++G g+W+ I r        Rt  ++k++w+++l
     EcC018596.80 484 AWTIAEVMRLVEGVSRYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 532
                      7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.774477536IPR017930Myb domain
SuperFamilySSF466895.08E-16479542IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-12479535IPR009057Homeodomain-like
SMARTSM007172.6E-7481534IPR001005SANT/Myb domain
CDDcd116607.85E-20483533No hitNo description
PfamPF002493.1E-6484532IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0003677Molecular FunctionDNA binding
GO:0005525Molecular FunctionGTP binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
METVAGAEGV DETLFEDRGV GKTSPSTSPT KHVEGDGTLV PATDDEFMEV VDLINDNPNK  60
MHIVEPGQAV GISMEDSSSG KSLSELSGFS KFEDVYADAE NLESSIQKLL LDILMQETAA  120
PVAPSSDMDQ MKQSLDAAEC SKSPDQIRES ESSCAATSLL PDFSKLKGEI CLDNLSIREL  180
HDTFRATFGR VTTAKDKTWL KRRIAMGLTN SCDVPSTSFV IKENQILKLG EEENSNNVNC  240
AVETDQDAVA INDQHTDSDN SQKKQLEDCQ IISGKRLRNY GPIEDSQPEV LSREQKSVKR  300
LRKPTRRYIE EVSEVEHHEP TGRSVIPAKS CGWDSPKSGA RPAKNVSPDR RTYVTRLDSV  360
AGLRVPCISR IRRSRPRKDI MALVGLYHSS GGMSGKLVSK TSRTSSDPKK IQHQSAEIQH  420
VSLIHVLVGI ELVEKDDQCM TIDRVEPEQN LEAKHGDSSG DASKDNIVTV PTAKGGIRRK  480
HHRAWTIAEV MRLVEGVSRY GAGRWSEIKR LAFASYSYRT SVDLKDKWRN LLKASFAPAP  540
TDKGMNPRKH VSAPIPAAIL LRVRELAELH AQASPNLSTS KLVGCGGSVN GTRSGYL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1371377RRSRPRK
2371378RRSRPRKD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033745.10.0PREDICTED: uncharacterized protein LOC104422992 isoform X1
TrEMBLA0A059AIR00.0A0A059AIR0_EUCGR; Uncharacterized protein
STRINGXP_010033745.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-103TRF-like 6