PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC018560.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 545aa    MW: 60616.1 Da    PI: 5.3766
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC018560.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1402.4e-433915391152
          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                   l++lL+ cA+avss+d + a+ +L +++++asp+gd  qRla+yf+++L+arl +++s++y+al +++ts    ++ l+a++++  ++P+ +++++ 
  EcC018560.10 391 LRTLLILCAQAVSSDDRRTANDYLRQIRQHASPSGDGSQRLAHYFANGLEARLEGTGSQVYAALGSKKTS---AVDLLKAYHVYRTAFPFQRVANMF 484
                   5789************************************************************999999...9*********************** PP

          GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspes 152
                      +I+  ve+++++HiiDf+is+ +QWpa++  L+ R++gpp+lRiTg++ p+ 
  EcC018560.10 485 VGDMIMHLVEKATTLHIIDFGISNVFQWPAFISRLSRRTGGPPKLRITGIELPQR 539
                   **************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.623365545IPR005202Transcription factor GRAS
PfamPF035148.2E-41391539IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MLMESRVTGF SGSLRTFKFD DETLLPFSDQ RANFTNGFDR AGPSPDPGFA HKPFFPSDPR  60
YCDSALSSLV SAEADLPSDD SDFSETVFRY INHMLLEEDM EENPSTFHDP LALQAAEKSL  120
YEALSEPYPS EANSSPPFMD SPDNNYSGNS SDYGKSSPSS NTSGSNFADH QWLGDLGDGR  180
NYLPRSSVTG DFIFQATVNA HVQPSFSLRN SFLNNGNRTK ASLGSGPLFL NFSTESQSVL  240
QFQRGVEEAS KFLPQGTQLF IDLEKSSVNS WFKERKSLNV VKVEKDESDL LPLNGISGKK  300
NHQREDSEFE DERSNKQTAV YVDDTELSEM MDKLLVCHSK GKSQDSNADE SSKKEVSESL  360
QQNRQTHTAD GGKFHNKKPT PTSNMTEMVD LRTLLILCAQ AVSSDDRRTA NDYLRQIRQH  420
ASPSGDGSQR LAHYFANGLE ARLEGTGSQV YAALGSKKTS AVDLLKAYHV YRTAFPFQRV  480
ANMFVGDMIM HLVEKATTLH IIDFGISNVF QWPAFISRLS RRTGGPPKLR ITGIELPQRG  540
FRPAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-2239853426165Protein SCARECROW
5b3h_A7e-2239853425164Protein SCARECROW
5b3h_D7e-2239853425164Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033118.10.0PREDICTED: scarecrow-like protein 14 isoform X1
RefseqXP_018719600.10.0PREDICTED: scarecrow-like protein 14 isoform X1
TrEMBLA0A059AG790.0A0A059AG79_EUCGR; Uncharacterized protein
STRINGXP_010033118.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-126SCARECROW-like 14