PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC017360.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 307aa    MW: 33584.2 Da    PI: 6.5866
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC017360.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY109.31.8e-34145202259
                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   +Dgy+WrKYGqK vk+s+fprsYYrCtsa+C+vkk+vers +dp++v +tYeg+Hnh 
  EcC017360.40 145 EDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERSVSDPSIVMTTYEGQHNHM 202
                   8********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381301.8E-993307IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.805.1E-35129204IPR003657WRKY domain
SuperFamilySSF1182905.36E-29136203IPR003657WRKY domain
PROSITE profilePS5081132.064139204IPR003657WRKY domain
SMARTSM007741.2E-39144203IPR003657WRKY domain
PfamPF031061.2E-26145201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MENTDRSASL LFADHGHGGL SDFVFSEFDR SMMAGSSGFM ELLGFHQDSS GPSLFDVPLR  60
PPTSNAMESS SEVVNPPATP NSSSISSASN NDGLNNNEEE EQQVKAKVED EGVETQELKA  120
KKTNEKRQRQ PRVAFMTKSE VDHLEDGYRW RKYGQKAVKN SPFPRSYYRC TSASCNVKKR  180
VERSVSDPSI VMTTYEGQHN HMSPVMPRSI LAGVTPPPAG AAATAFSMPA MPGASLTQHH  240
AHHYQLQSYA NNWSMSNNSA VVPSSGSTNA AVLLNKRRFC SPGPSNFLAD NGLLQDMVPS  300
HVLKEEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-29134204777Probable WRKY transcription factor 4
2lex_A7e-29134204777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010069824.10.0PREDICTED: probable WRKY transcription factor 23
SwissprotO229002e-60WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A059AXB40.0A0A059AXB4_EUCGR; WRKY transcription factor
STRINGXP_010069824.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.12e-53WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]