PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC017027.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 239aa    MW: 27481.1 Da    PI: 9.9616
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC017027.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.9e-17956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll ++v+++G g W+ ++r+ g++R++k+c++rw++yl
     EcC017027.40  9 KGAWTEEEDVLLRKCVEKYGEGKWHQVPRRGGLNRCRKSCRLRWLNYL 56
                     79********************************************97 PP
2Myb_DNA-binding45.91.3e-1462107148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++ ++E + +++++k+lG++ W++Ia +++ gRt++++k++w+++l
     EcC017027.40  62 RGAFHADEVDMIIRLHKLLGNR-WSLIAGRLQ-GRTANDIKNYWNTHL 107
                      899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.427460IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-22558IPR009057Homeodomain-like
SuperFamilySSF466891.36E-286103IPR009057Homeodomain-like
SMARTSM007171.1E-14858IPR001005SANT/Myb domain
PfamPF002499.3E-16956IPR001005SANT/Myb domain
CDDcd001671.72E-101156No hitNo description
Gene3DG3DSA:1.10.10.602.9E-2359111IPR009057Homeodomain-like
PROSITE profilePS5129418.99961111IPR017930Myb domain
SMARTSM007172.8E-1361109IPR001005SANT/Myb domain
PfamPF002497.0E-1362107IPR001005SANT/Myb domain
CDDcd001671.16E-864107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MEGAAGVRKG AWTEEEDVLL RKCVEKYGEG KWHQVPRRGG LNRCRKSCRL RWLNYLKPNI  60
KRGAFHADEV DMIIRLHKLL GNRWSLIAGR LQGRTANDIK NYWNTHLAKK VVYQKQKEDK  120
PPWKFVTKVN IIRPQPRTFS KSSVWINGNA TQVALRTPPG ENLGQPSPIL FHQDKESAWW  180
EDLLTESSPN EGLVTSTSGS EGQPGVKSWP REFAMDEGRN GWNELSFDTD IWEFLDSNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-2131111108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064838.21e-176PREDICTED: transcription factor MYB114 isoform X2
SwissprotQ9FNV95e-64MY113_ARATH; Transcription factor MYB113
TrEMBLA0A059BTP41e-100A0A059BTP4_EUCGR; Uncharacterized protein
STRINGXP_010064838.11e-175(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-66myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]