PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC015551.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 349aa    MW: 39407.1 Da    PI: 6.2729
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC015551.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.5e-171259148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l +++ ++G g+W+++++  g+ R++k+c++rw +yl
     EcC015551.30 12 KGLWSPEEDEKLFNYISRHGLGCWSSVPKLAGLQRCGKSCRLRWINYL 59
                     678*******************************************97 PP
2Myb_DNA-binding475.9e-1565109147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg ++++E++l++ +++ lG++ W+ Ia  ++ gRt++++k++w++y
     EcC015551.30  65 RGMFSQQEEDLIITLHAALGNR-WAQIATQLP-GRTDNEIKNFWNSY 109
                      788*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-24662IPR009057Homeodomain-like
PROSITE profilePS5129417.921759IPR017930Myb domain
SuperFamilySSF466898.61E-2910106IPR009057Homeodomain-like
SMARTSM007171.1E-121161IPR001005SANT/Myb domain
PfamPF002491.8E-151259IPR001005SANT/Myb domain
CDDcd001673.35E-111559No hitNo description
PROSITE profilePS5129424.33660114IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2463114IPR009057Homeodomain-like
SMARTSM007178.0E-1464112IPR001005SANT/Myb domain
PfamPF002494.4E-1465109IPR001005SANT/Myb domain
CDDcd001675.64E-1068110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010431Biological Processseed maturation
GO:0016441Biological Processposttranscriptional gene silencing
GO:0016575Biological Processhistone deacetylation
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003677Molecular FunctionDNA binding
GO:0004407Molecular Functionhistone deacetylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MARSSCNQKL RKGLWSPEED EKLFNYISRH GLGCWSSVPK LAGLQRCGKS CRLRWINYLR  60
PDLKRGMFSQ QEEDLIITLH AALGNRWAQI ATQLPGRTDN EIKNFWNSYV RKKLTKQGID  120
PVTHKPLREL NSMSENCVEI EAAQALQEFK GSRDISSLRA KEPAFPIDGM HGGPMESPVG  180
EVFLNRALFD PSSSSEFHNA INPVLHGARS RLVDPGYFEM NAAPFSSVSS SMEIDHENKN  240
TSGNLVSRMS CLFFHEAKKY CSNSSNNISN NTEFQLNSAA ENKDLPWADD EELDPLHQFQ  300
ANVTGSEDLK SISWQEEHLL AHAAVDFHGN HPSMSLSDDQ ILQEHFNIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-27711422128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037524.10.0PREDICTED: transcription factor MYB46
TrEMBLA0A059A5X50.0A0A059A5X5_EUCGR; Uncharacterized protein
STRINGXP_010037524.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.13e-76myb domain protein 86