PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

M-type_MADS

Protein Properties

Length: 87aa MW: 9831.48 Da PI: 10.32

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC014797.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84	9.4e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri+++ rqvtfskRr+g+lKKA EL +LCdaev vi+fs tgkly+++s EcC014797.10 9 KRIDDSASRQVTFSKRRKGLLKKARELAILCDAEVGVIVFSCTGKLYDFAS 59 79***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.8E-37	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	30.333	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.80E-41	2	78	No hit	No description
SuperFamily	SSF55455	2.62E-31	2	77	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-27	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.4E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-27	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-27	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 87 aa Download sequence Send to blast
MGRGKIVIKR IDDSASRQVT FSKRRKGLLK KARELAILCD AEVGVIVFSC TGKLYDFASS 60 SMQSVLQRYR ELREEGHQLL NPASEIM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	3e-23	1	74	1	74	MEF2C
5f28_B	3e-23	1	74	1	74	MEF2C
5f28_C	3e-23	1	74	1	74	MEF2C
5f28_D	3e-23	1	74	1	74	MEF2C
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010065744.1	2e-56	PREDICTED: MADS-box transcription factor 23
Swissprot	Q9SZJ6	4e-44	AGL21_ARATH; Agamous-like MADS-box protein AGL21
TrEMBL	A0A2C9VIG1	9e-45	A0A2C9VIG1_MANES; Uncharacterized protein (Fragment)
STRING	XP_010065744.1	8e-56	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM78	28	413

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	2e-46	AGAMOUS-like 21

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Yu LH, et al. Arabidopsis MADS-Box Transcription Factor AGL21 Acts as Environmental Surveillance of Seed Germination by Regulating ABI5 Expression. Mol Plant, 2017. 10(6): p. 834-845 [PMID:28438576] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128] Sun CH, et al. Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis. Plant Sci., 2018. 266: p. 27-36 [PMID:29241564]