PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC012837.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 383aa MW: 41819.6 Da PI: 8.9054

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC012837.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	5e-05	148	171	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg++F + +L++H t H EcC012837.10 148 FPCTSCGEVFQKPQLLEQHHATrH 171 89*****************99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.66	148	176	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	150	171	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.63E-14	173	382	No hit	No description
Gene3D	G3DSA:3.90.228.10	8.0E-5	185	288	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain
Gene3D	G3DSA:3.90.228.10	1.1E-4	317	382	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MASSGSSPSS SFFGKFRSLL LLLLLHLGCF IFSSSSSSVS AASTTIKKRK ASPTASHFKP 60 RKALSSSWSY LKGILISKPR ASHPPTPSLT SARNSQRSIA SLVSPAEAHA LAELTSTPPR 120 EKTWPGTLLQ EEPDHADLFF PLRNDAIFPC TSCGEVFQKP QLLEQHHATR HAVSELIGED 180 SGRNIVQIIF QTGWPAGKSL RVLRILKIHH GPRTLSRFEE YRESVKTRAA RASRRRDERC 240 VADGNELLRF HCSTFTCDLG QDGNSSICNQ QYCNVCGIIK SGFSKKLDGI STLSSGWKAH 300 GTLPDDVVEE FGFMHVKRAM LVCRVIAGRV GSEADDVDKE EGGGFDSVVG RGGSGALTRL 360 DDEDLLVFNP RAVLPCFVIV YTV

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MASSGSSPSS SFFGKFRSLL LLLLLHLGCF IFSSSSSSVS AASTTIKKRK ASPTASHFKP  60
RKALSSSWSY LKGILISKPR ASHPPTPSLT SARNSQRSIA SLVSPAEAHA LAELTSTPPR  120
EKTWPGTLLQ EEPDHADLFF PLRNDAIFPC TSCGEVFQKP QLLEQHHATR HAVSELIGED  180
SGRNIVQIIF QTGWPAGKSL RVLRILKIHH GPRTLSRFEE YRESVKTRAA RASRRRDERC  240
VADGNELLRF HCSTFTCDLG QDGNSSICNQ QYCNVCGIIK SGFSKKLDGI STLSSGWKAH  300
GTLPDDVVEE FGFMHVKRAM LVCRVIAGRV GSEADDVDKE EGGGFDSVVG RGGSGALTRL  360
DDEDLLVFNP RAVLPCFVIV YTV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010033020.1	0.0	PREDICTED: uncharacterized protein LOC104422399
TrEMBL	A0A059AFW7	0.0	A0A059AFW7_EUCGR; Uncharacterized protein
STRING	XP_010033020.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7919	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-101	C2H2 family protein