PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC011873.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 221aa    MW: 25285.4 Da    PI: 9.1447
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC011873.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.38.4e-191057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd ll+d+v+ +G+g W++I+++ g++R++k+c++rw +yl
     EcC011873.40 10 KGLWTAEEDRLLADYVRVHGKGKWNRIPQMTGLKRCGKSCRLRWMNYL 57
                     678*******************************************97 PP
2Myb_DNA-binding60.14.6e-1963108148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++eEd+l+++++++lG++ W++Ia +++ gRt++q+k++w+++l
     EcC011873.40  63 RGDFSEEEDDLIIRLHNLLGNR-WSLIAGRVP-GRTDNQVKNHWNTHL 108
                      899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.866557IPR017930Myb domain
SuperFamilySSF466892.4E-318104IPR009057Homeodomain-like
SMARTSM007173.0E-14959IPR001005SANT/Myb domain
PfamPF002494.8E-171057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-231164IPR009057Homeodomain-like
CDDcd001671.08E-111357No hitNo description
PROSITE profilePS5129428.20258112IPR017930Myb domain
SMARTSM007175.1E-1862110IPR001005SANT/Myb domain
PfamPF002497.5E-1863108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2665112IPR009057Homeodomain-like
CDDcd001673.62E-1366108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MKGEKKEHRK GLWTAEEDRL LADYVRVHGK GKWNRIPQMT GLKRCGKSCR LRWMNYLSPS  60
VKRGDFSEEE DDLIIRLHNL LGNRWSLIAG RVPGRTDNQV KNHWNTHLSK RLGFKKGNGR  120
ADDHRPRTHL KKEKENHAMV LGSSLEPPSS DHLEETARKI TGDDKSSRGA LVECDSSQQL  180
ATPSNEFQNP FWFFNSDLNL YSPDFTDGLG EYALDLVSDG L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27101127108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001289651.11e-163transcription factor WER-like
TrEMBLC5NSL31e-161C5NSL3_EUCGR; Transcription factor Myb
STRINGXP_010028387.11e-161(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.12e-64myb domain protein 66