PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC011751.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 257aa    MW: 29456.7 Da    PI: 5.2216
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC011751.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.1e-16145448
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     WT+eEd  l  +v+ +G g+W+++a   g++Rt+k+c++rw++yl
     EcC011751.20  1 WTEEEDAVLRSYVETHGEGRWNSVAYFAGLRRTGKSCRLRWLNYL 45
                     *******************************************97 PP
2Myb_DNA-binding50.35.4e-165194146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg+ + eE++++++++ ++G++ W++Ia++++ gRt++++k++w++
     EcC011751.20 51 RGNISLEEQLIILELHSRWGNR-WSKIAKHLP-GRTDNEIKNYWRT 94
                     78999*****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001674.62E-11145No hitNo description
SMARTSM007173.5E-10147IPR001005SANT/Myb domain
PROSITE profilePS5129424.578149IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-22152IPR009057Homeodomain-like
PfamPF002492.7E-15145IPR001005SANT/Myb domain
SuperFamilySSF466894.87E-29192IPR009057Homeodomain-like
SMARTSM007172.2E-145098IPR001005SANT/Myb domain
PROSITE profilePS5129419.51450100IPR017930Myb domain
PfamPF002491.4E-145194IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-225399IPR009057Homeodomain-like
CDDcd001671.29E-105594No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
WTEEEDAVLR SYVETHGEGR WNSVAYFAGL RRTGKSCRLR WLNYLRPQVR RGNISLEEQL  60
IILELHSRWG NRWSKIAKHL PGRTDNEIKN YWRTRVQKQA KQMKCDVNSQ QFRDTMRYEW  120
MPRLAERIRA AEFKGQPACL PVSSSNDPIF DNRGVRMAEL ESGWKDPSLM PEVSSGISSD  180
SSDAQVSPVS GLTESYNPPD GLTGGPGSGA GYSGWDMPGQ EDMMSSELFL DGGDSWDSLW  240
NEENVWFLRQ QLSDDHF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-23110030128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010038307.10.0PREDICTED: transcription factor MYB108
SwissprotQ10MB42e-72MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A059A8Z40.0A0A059A8Z4_EUCGR; Uncharacterized protein
STRINGXP_010038307.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-67myb domain protein 78
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]