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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC007140.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | DBB | ||||||||
Protein Properties | Length: 268aa MW: 28630.7 Da PI: 4.207 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.4 | 2.2e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++e++ +C+++ +lC +C + H+ H++ EcC007140.10 4 ICEFCGEQRSMVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44 7*****************************65677777776 PP | |||||||
2 | zf-B_box | 19.7 | 1.8e-06 | 46 | 89 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 C++++++++ C + ++ lC++C +H g H++++ EcC007140.10 46 LLCERCNSQPACVRCAEERVSLCQNCDWIGH-GastsasaHKRQT 89 57***************************9*.5588888888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.755 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.21E-7 | 4 | 47 | No hit | No description |
SMART | SM00336 | 3.6E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.916 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.14E-4 | 47 | 90 | No hit | No description |
SMART | SM00336 | 3 | 48 | 90 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MGYICEFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CNSQPACVRC 60 AEERVSLCQN CDWIGHGAST SASAHKRQTL NCYSGCPSAA ELSSIWSFVL DYPSGGESAC 120 EKGMGLMSIA EGNENAACIP PKDSSSQDVS VCADDEAGNA NAWVGSSSLP EHKSASLNMG 180 QLAASASTAT PKACLPITRS PGLFEDDRFY EDFNMDEVDL DLENYDELFG VALTNSELLF 240 ENGGIDSLFG AKEMSAADSN CQGPVVAE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010048289.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_018729416.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9 | ||||
Swissprot | Q9LUA9 | 2e-86 | COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10 | ||||
TrEMBL | A0A059DE80 | 0.0 | A0A059DE80_EUCGR; Uncharacterized protein | ||||
STRING | XP_010048289.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1682 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 6e-89 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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