PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC004851.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 239aa    MW: 27550.8 Da    PI: 7.8187
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC004851.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.1e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd++l  +v ++G  +W++ +++ g+ R++k+c++rw +yl
     EcC004851.40 14 KGTWTPEEDKKLRAYVSRYGYWNWRKLPKYAGLSRCGKSCRLRWMNYL 61
                     799*******************************************97 PP
2Myb_DNA-binding51.32.8e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ T+eE++ ++++  +lG++ W++Ia++++ gRt++++k++w++ 
     EcC004851.40  67 RGNYTKEEEDTIIRLQGLLGNK-WSAIASHLP-GRTDNEVKNHWHTN 111
                      899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.025961IPR017930Myb domain
SuperFamilySSF466891.47E-3011108IPR009057Homeodomain-like
SMARTSM007174.1E-121363IPR001005SANT/Myb domain
PfamPF002493.6E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-241568IPR009057Homeodomain-like
CDDcd001675.60E-101661No hitNo description
PROSITE profilePS5129424.81962116IPR017930Myb domain
SMARTSM007176.8E-1666114IPR001005SANT/Myb domain
PfamPF002497.3E-1567111IPR001005SANT/Myb domain
CDDcd001671.27E-1069112No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2469117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MARTPGRDKN GMKKGTWTPE EDKKLRAYVS RYGYWNWRKL PKYAGLSRCG KSCRLRWMNY  60
LRPDIKRGNY TKEEEDTIIR LQGLLGNKWS AIASHLPGRT DNEVKNHWHT NLRKRLNQKT  120
SLTPPQEATI AENHSCDLEV GPKNMSETSP NNIFDFPINF RMTPQIVEGF ASLHLSSSSR  180
ETSLSRCIEA VDFSNTECEA SCDTYIAESS GSFWTEPFIT DNNIESWLSL DESSLDFFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26121175109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010069815.11e-158PREDICTED: myb-related protein Myb4 isoform X2
SwissprotQ7XBH46e-58MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A059DFF51e-156A0A059DFF5_EUCGR; Uncharacterized protein
STRINGXP_010069815.11e-157(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.15e-58myb domain protein 15
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]