PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Publication

Basic Information? help Back to Top

TF ID

EcC004838.30

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB_related

Protein Properties

Length: 300aa MW: 33021 Da PI: 10.1372

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC004838.30	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.3	1.5e-12	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI + k R+ ++k++w++ EcC004838.30 5 KQKWTAEEEAALKAGVIKHGAGKWRTILTDLEfkeilKMRSNVDLKDKWRN 55 79************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.448	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	8.97E-15	2	73	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-6	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.7E-12	5	56	IPR009057	Homeodomain-like
Pfam	PF00249	1.0E-8	5	55	IPR001005	SANT/Myb domain
CDD	cd11660	7.01E-16	6	57	No hit	No description
SMART	SM00526	2.9E-9	117	187	IPR005818	Linker histone H1/H5, domain H15
PROSITE profile	PS51504	22.023	119	192	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	6.5E-14	120	196	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	3.37E-14	122	200	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	4.0E-8	124	185	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0009658	Biological Process	chloroplast organization
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0010468	Biological Process	regulation of gene expression
GO:0042793	Biological Process	transcription from plastid promoter
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0009507	Cellular Component	chloroplast
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MGAPKQKWTA EEEAALKAGV IKHGAGKWRT ILTDLEFKEI LKMRSNVDLK DKWRNINVTA 60 IWGSRQKARL ALKKNLLTPK HDSNTLALAS ARNDEEILDA TPLAVSGETI NNANPKERMK 120 SRLDNLIIEA LTNLKDPSGS DRAAIAAYIE DFHMQDQYLA PPNLKKLLSA KLKLMIANGK 180 LIKVKHRYRI AQNPKTMEAR RGSSRSIVEG RPKDSFKGDK REVKIYTKTQ IDAELLKMKS 240 MTAQEAAAAA AKAVAEAEAA MAEAEEAARE AEAAEAEAEA AQIFAQAAIN ALKCGTLHAW

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000269\|PubMed:19102728}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010023316.1	0.0	PREDICTED: telomere repeat-binding factor 1 isoform X1
Swissprot	Q8VWK4	4e-75	TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBL	A0A059B1M3	0.0	A0A059B1M3_EUCGR; Uncharacterized protein
STRING	XP_010023316.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	3e-66	telomere repeat binding factor 1

Publications ? help Back to Top
Alexandrov NN, et al. Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol., 2006. 60(1): p. 69-85 [PMID:16463100] Schrumpfová PP, et al. Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase. Plant J., 2014. 77(5): p. 770-81 [PMID:24397874] Liang SC, et al. Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2. PLoS Genet., 2015. 11(12): p. e1005660 [PMID:26642436] Fulcher N,Riha K Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana. Front Genet, 2015. 6: p. 349 [PMID:26779251] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]