PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC004626.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 216aa MW: 23607.9 Da PI: 10.7645 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.7 | 1.3e-13 | 133 | 178 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+eE+ ++ + + lG+g+W+ I++++ +Rt+ q+ s+ qky EcC004626.10 133 LPWTEEEHRTFLVGLETLGKGDWRGISKKFVGTRTPTQVASHAQKY 178 69****************************99*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.497 | 127 | 183 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.64E-18 | 128 | 184 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.0E-17 | 130 | 182 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 5.8E-10 | 131 | 181 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-10 | 133 | 178 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.85E-10 | 134 | 179 | No hit | No description |
Pfam | PF00249 | 1.3E-11 | 134 | 178 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MGRKCSHCGF MGHNSRTCAS IRRRDASFGG GGGGRVKLFG VQLEAAYPCG VASRLPLKKS 60 LSMDCLMPSV RVLTSSSPLS SATNSSLSLR AACDVGDRLL RDESANKAAN SPSNDGYASD 120 GFLGRAQERK KGLPWTEEEH RTFLVGLETL GKGDWRGISK KFVGTRTPTQ VASHAQKYFL 180 RQKSLLPRRN KRRPSLFDVT HLDPPQALSK LEEKLN |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00565 | DAP | Transfer from AT5G56840 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010049179.2 | 1e-139 | PREDICTED: protein REVEILLE 6 | ||||
Refseq | XP_010052392.1 | 1e-139 | PREDICTED: protein REVEILLE 5 | ||||
TrEMBL | A0A059CD27 | 1e-138 | A0A059CD27_EUCGR; Uncharacterized protein | ||||
STRING | XP_010049179.1 | 1e-153 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5496 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 8e-47 | MYB_related family protein |