PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC004052.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

WRKY

Protein Properties

Length: 154aa MW: 17640.8 Da PI: 10.2567

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC004052.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.7	4.1e-32	70	128	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK vk+s++prsYYrC+ C+vkk+v+r +ed+++v++tYeg Hnh+ EcC004052.10 70 LDDGFRWRKYGQKAVKNSTHPRSYYRCARIACNVKKQVQRLSEDTSIVVTTYEGIHNHP 128 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.2E-33	57	129	IPR003657	WRKY domain
SuperFamily	SSF118290	2.48E-28	62	129	IPR003657	WRKY domain
PROSITE profile	PS50811	28.449	65	130	IPR003657	WRKY domain
SMART	SM00774	5.1E-37	70	129	IPR003657	WRKY domain
Pfam	PF03106	1.2E-25	71	128	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
ASAWIDGRGT LDGDAARHEA SLVASEYRTA MEEIRARRLE KRSKAAASSR ARNVASPRFE 60 FQTRSEDDLL DDGFRWRKYG QKAVKNSTHP RSYYRCARIA CNVKKQVQRL SEDTSIVVTT 120 YEGIHNHPSE KIMETLSPLL RQIQLLSRFS PDKQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-26	61	127	8	74	Probable WRKY transcription factor 4
2lex_A	3e-26	61	127	8	74	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00317	DAP	Transfer from AT2G46130	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010053764.1	1e-109	PREDICTED: probable WRKY transcription factor 75
Swissprot	Q8GY11	1e-51	WRK43_ARATH; Probable WRKY transcription factor 43
Swissprot	Q8VWQ4	8e-51	WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBL	A0A059CI98	2e-72	A0A059CI98_EUCGR; Uncharacterized protein
STRING	XP_010053764.1	1e-108	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM509	28	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64000.1	5e-51	WRKY DNA-binding protein 56

Publications ? help Back to Top
Geilen K,Heilmann M,Hillmer S,Böhmer M WRKY43 regulates polyunsaturated fatty acid content and seed germination under unfavourable growth conditions. Sci Rep, 2017. 7(1): p. 14235 [PMID:29079824]