PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC004039.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 526aa    MW: 56472.8 Da    PI: 7.1315
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC004039.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY109.21.9e-34253309259
                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  d++++ei+Y+g+Hnh+
  EcC004039.20 253 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPTCPVKKKVERSL-DGQITEIIYKGQHNHQ 309
                   8****************************************.***************8 PP
2WRKY107.37.4e-34415473159
                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   ldDgy+WrKYGqK vkg+++prsYY+Ct++gC+v+k+ver+++dp++v++tYeg+Hnh+
  EcC004039.20 415 LDDGYRWRKYGQKLVKGNPYPRSYYKCTTTGCNVRKHVERASSDPQAVITTYEGKHNHD 473
                   59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-30243311IPR003657WRKY domain
PROSITE profilePS5081123.468247311IPR003657WRKY domain
SuperFamilySSF1182902.48E-26250311IPR003657WRKY domain
SMARTSM007743.0E-38252310IPR003657WRKY domain
PfamPF031065.0E-26253309IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.9E-37401475IPR003657WRKY domain
SuperFamilySSF1182907.06E-30407475IPR003657WRKY domain
PROSITE profilePS5081138.239410475IPR003657WRKY domain
SMARTSM007742.0E-39415474IPR003657WRKY domain
PfamPF031061.5E-26416473IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006452Biological Processtranslational frameshifting
GO:0045901Biological Processpositive regulation of translational elongation
GO:0045905Biological Processpositive regulation of translational termination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003746Molecular Functiontranslation elongation factor activity
GO:0008270Molecular Functionzinc ion binding
GO:0043022Molecular Functionribosome binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MAGNDQPPPP PFHARPTAPA RPSLALPPHP SVDSLFASSS GGGGGGGGGW LGGMGLGLSP  60
GPMTMVSHLF PDGEDCKSFS QLLSGATAAS PTAQYLGFSF PSASSAPERT AVLPPGELRF  120
KQSRPDGLAV TQPLFAIPPG LSPAALLDSP GAFHPVPGHL GMSYQHGFLR MGTQGLQAQP  180
HHVQSGYASA SSSTAALSLG RMQFPPFAVS TSMMNQQNLS LEGPKIIESE PIDFSRPDQR  240
PPVSSFAIDK PADDGYNWRK YGQKQVKGSE FPRSYYKCTH PTCPVKKKVE RSLDGQITEI  300
IYKGQHNHQP PKGNKRAKDS GAANGSSDVE ESSQIPLGLM PQDPDSSQVT PAQFSGTSDS  360
EEVGDADTGA DEGDEDEPEP KRRSMEVMAP DAGSVHRTIT EPKIIVQTTS EVDLLDDGYR  420
WRKYGQKLVK GNPYPRSYYK CTTTGCNVRK HVERASSDPQ AVITTYEGKH NHDVPAAKSS  480
SHSVANSYAS QSRQQQNAEL EKHAMFRTSA QQQLTSRLRL KEEQLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-41253476878Probable WRKY transcription factor 4
2lex_A9e-41253476878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066870.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9ZQ701e-148WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A059BGX20.0A0A059BGX2_EUCGR; Uncharacterized protein
STRINGXP_010066870.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-124WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]