PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

EcC003968.30

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

M-type_MADS

Protein Properties

Length: 106aa MW: 12268.8 Da PI: 9.6858

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC003968.30	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	59	5.7e-19	14	63	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien+ +r +tfskRr gi K A+EL +LC aev v+++s++gk + ++ EcC003968.30 14 KRIENEERRLITFSKRRSGIYKIASELVTLCRAEVGVVVLSPSGKPFSFA 63 79******************************************977775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.1E-22	6	65	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.184	6	66	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.02E-24	7	81	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.2E-17	8	28	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.2E-21	15	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.2E-17	28	43	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.2E-17	43	64	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
WQENRRGHQR IEMKRIENEE RRLITFSKRR SGIYKIASEL VTLCRAEVGV VVLSPSGKPF 60 SFAHPSIDTV ANQFLNRNPP PIDGSYALVE SNRQARINEL NQQYDE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018722168.1	5e-67	PREDICTED: agamous-like MADS-box protein AGL61
TrEMBL	A0A059C798	2e-64	A0A059C798_EUCGR; Uncharacterized protein
STRING	XP_010059074.1	5e-70	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	2e-27	AGAMOUS-like 62