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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | EcC003711.10 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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| Family | bHLH | ||||||||
| Protein Properties | Length: 215aa MW: 24065.5 Da PI: 9.6562 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 32 | 2.2e-10 | 23 | 76 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55
rr+ +++E++RR+r+++ ++ L +llP+ + +++ s + +A++YIk L+
EcC003711.10 23 RRTERKIIEKNRRNRMKHLYSVLNSLLPSqP---SAQEaKSLPDQIDEAIRYIKGLE 76
79999************************55...344446777***********985 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| CDD | cd00083 | 5.77E-6 | 20 | 80 | No hit | No description |
| SuperFamily | SSF47459 | 9.81E-11 | 21 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 11.706 | 22 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 8.1E-10 | 23 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 5.0E-7 | 23 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 5.6E-5 | 28 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 215 aa Download sequence Send to blast |
MALSLLNAIG KEMERGRQPS SPRRTERKII EKNRRNRMKH LYSVLNSLLP SQPSAQEAKS 60 LPDQIDEAIR YIKGLETAVK EAKDKKENLM GKKRPSPSTS SDTLAAITSP KIEIRVRDSS 120 LEVTLTSGLH DQFIFSEILR ILHEEKVEVL NVNFSVVGNS VYHLVHAKIG ESALGAAMIS 180 QRLKTFVYGA ATDGGHEEFH PNLWDCGLSS NIWNF |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_018720370.1 | 1e-154 | PREDICTED: uncharacterized protein LOC108955971 | ||||
| TrEMBL | A0A058ZZB7 | 1e-155 | A0A058ZZB7_EUCGR; Uncharacterized protein | ||||
| STRING | XP_010038678.1 | 1e-131 | (Eucalyptus grandis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM1278 | 25 | 92 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G20970.1 | 2e-29 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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