PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC003131.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 234aa MW: 25289.8 Da PI: 10.4958 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 247.1 | 1.1e-75 | 62 | 234 | 131 | 301 |
GAGA_bind 131 klealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkv.kkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkW 225 ++++p +++ + +k +k kk+++++k+p + ++k+ k+k++ +k+++ k ++++ +++k+ekk+++++++ ++D s++P P CsCtG+ r+CYkW EcC003131.30 62 ASTTEPAKSNSPGTKSAKPKKRKSSSKEPDQITSKALKQKQPRKKSSSgKGKGQSfPEAKREKKDLNMNIDLTNIDFSGVPSPYCSCTGIARVCYKW 158 3445566777777777888888888888888888866665555544440445555789*************************************** PP GAGA_bind 226 GnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 G+GGWqS+CCt+++S yPLP+s+ r+g R+agrKmS+ga+ klL +La+eGydl +pvDLkdhWA+HGtnkfvti+ EcC003131.30 159 GAGGWQSSCCTISVSEYPLPMSSSRPGVRLAGRKMSNGAYVKLLVRLASEGYDLTHPVDLKDHWARHGTNKFVTIK 234 ***************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 4.5E-77 | 1 | 234 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 7.1E-68 | 66 | 234 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005975 | Biological Process | carbohydrate metabolic process | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009853 | Biological Process | photorespiration | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0097339 | Biological Process | glycolate transmembrane transport | ||||
GO:1901975 | Biological Process | glycerate transmembrane transport | ||||
GO:0009706 | Cellular Component | chloroplast inner membrane | ||||
GO:0005506 | Molecular Function | iron ion binding | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0008974 | Molecular Function | phosphoribulokinase activity | ||||
GO:0016705 | Molecular Function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | ||||
GO:0020037 | Molecular Function | heme binding | ||||
GO:0043879 | Molecular Function | glycolate transmembrane transporter activity | ||||
GO:1901974 | Molecular Function | glycerate transmembrane transporter activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MGTYSNRGHI MPDANGGPSL SHIAWFYGSG FFPTPKVSSG PSSQTQLNPE DGLPVPPIRS 60 VASTTEPAKS NSPGTKSAKP KKRKSSSKEP DQITSKALKQ KQPRKKSSSG KGKGQSFPEA 120 KREKKDLNMN IDLTNIDFSG VPSPYCSCTG IARVCYKWGA GGWQSSCCTI SVSEYPLPMS 180 SSRPGVRLAG RKMSNGAYVK LLVRLASEGY DLTHPVDLKD HWARHGTNKF VTIK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010056207.1 | 1e-173 | PREDICTED: protein BASIC PENTACYSTEINE7 | ||||
Swissprot | O82286 | 2e-75 | BPC7_ARATH; Protein BASIC PENTACYSTEINE7 | ||||
TrEMBL | A0A059C3N5 | 1e-171 | A0A059C3N5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010056207.1 | 1e-172 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35550.4 | 5e-72 | basic pentacysteine 7 |