PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

EcC002532.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

SRS

Protein Properties

Length: 337aa MW: 37934.6 Da PI: 6.3534

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC002532.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	213	7.3e-66	96	249	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssa..esk 97 g+++CqdCGnqakkdC+h RCRtCCksrgf+C thvkstWvpaakrrerqq+la+a+ + +++++ +++ + + + + +++ a + EcC002532.20 96 GGGINCQDCGNQAKKDCVHLRCRTCCKSRGFECPTHVKSTWVPAAKRRERQQHLATAAVMHHQQQQQPLRQEQPFQLDHYFKRQRDGEVAAAppFPI 192 5789***********************************************99987666555433333332222222222223333332200233 PP DUF702 98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ + lP+e++s+avfrc+rvs++dd +ee+aYqtav+igGhvf+GiLydqG+e+ EcC002532.20 193 ATSVGQALPPEINSSAVFRCLRVSAMDDTDEEFAYQTAVNIGGHVFRGILYDQGPES 249 4445566**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.4E-64	98	248	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.1E-27	100	142	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	9.3E-25	200	247	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MAEVFFLSQL APPSAHQDQE PVEDTNTLLH GPSNHHQEAE EEQEILQLWP QSQWYHQPHH 60 HQSADGFFSL GAGPSSRSPE LLTMMMRHGG EGGGGGGGIN CQDCGNQAKK DCVHLRCRTC 120 CKSRGFECPT HVKSTWVPAA KRRERQQHLA TAAVMHHQQQ QQPLRQEQPF QLDHYFKRQR 180 DGEVAAAPPF PIATSVGQAL PPEINSSAVF RCLRVSAMDD TDEEFAYQTA VNIGGHVFRG 240 ILYDQGPESR FSSAGESSSX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 300 XXXXXXXXXX XXXXXXXXXX XXXXXXYLMH SSCPDSL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010061013.1	1e-157	PREDICTED: protein SHI RELATED SEQUENCE 1
Swissprot	Q9XGX0	4e-56	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A059BQA6	3e-99	A0A059BQA6_EUCGR; Uncharacterized protein
STRING	XP_010061013.1	1e-157	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3419	28	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	4e-54	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]