PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC002371.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 199aa MW: 23628.4 Da PI: 9.2107

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC002371.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	142.3	2.9e-44	43	174	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFh tdeel+ +yLk+k+ g++ + ++i+e+di+++ePw+Lp+ ++ ++ke++ F++ ++ky+++kr+ r+t++gyWk tgk+++++s EcC002371.20 43 LPPGFRFHATDEELLIHYLKPKILGRPgERYYDMIPEIDICEFEPWQLPAmfCHWFNSKELFLFCRVKRKYSNSKRSDRTTEAGYWKVTGKERAIMS 139 79***********************6566788***********5343334889********************************** PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++e +g+kktLvfy+gr pkg++t+Wv hey+l EcC002371.20 140 EdTDEPIGIKKTLVFYTGRVPKGKRTNWVSHEYQL 174 967788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-46	37	179	IPR003441	NAC domain
PROSITE profile	PS51005	45.541	43	199	IPR003441	NAC domain
Pfam	PF02365	3.1E-22	44	174	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MLVPPRFKPF NKISVFLSCS SSLCFRRLVI QMENTISEAM RALPPGFRFH ATDEELLIHY 60 LKPKILGRPG ERYYDMIPEI DICEFEPWQL PAMFCHWFNS KELFLFCRVK RKYSNSKRSD 120 RTTEAGYWKV TGKERAIMSE DTDEPIGIKK TLVFYTGRVP KGKRTNWVSH EYQLNPKCLG 180 HNEDEVRFWF SFIAQLNWL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-34	42	174	16	142	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-34	42	174	16	142	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-34	42	174	16	142	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-34	42	174	16	142	NO APICAL MERISTEM PROTEIN
3swm_A	3e-34	42	174	19	145	NAC domain-containing protein 19
3swm_B	3e-34	42	174	19	145	NAC domain-containing protein 19
3swm_C	3e-34	42	174	19	145	NAC domain-containing protein 19
3swm_D	3e-34	42	174	19	145	NAC domain-containing protein 19
3swp_A	3e-34	42	174	19	145	NAC domain-containing protein 19
3swp_B	3e-34	42	174	19	145	NAC domain-containing protein 19
3swp_C	3e-34	42	174	19	145	NAC domain-containing protein 19
3swp_D	3e-34	42	174	19	145	NAC domain-containing protein 19
4dul_A	3e-34	42	174	16	142	NAC domain-containing protein 19
4dul_B	3e-34	42	174	16	142	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269\|PubMed:17947243, ECO:0000269\|PubMed:18443413, ECO:0000269\|PubMed:22826500, ECO:0000269\|PubMed:24329768}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018719541.1	1e-103	PREDICTED: protein NTM1-like 9
Swissprot	F4JN35	5e-42	NTL9_ARATH; Protein NTM1-like 9
TrEMBL	A0A059DCT8	1e-105	A0A059DCT8_EUCGR; Uncharacterized protein
STRING	XP_010065386.1	1e-100	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM190	28	276

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	3e-44	NAC transcription factor-like 9

Publications ? help Back to Top
Zheng XY, et al. Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73 [PMID:26139525] Guo T, et al. Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana. Mol Plant, 2017. 10(10): p. 1334-1348 [PMID:28943325]