PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC002007.50
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 321aa    MW: 35525.6 Da    PI: 5.0446
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC002007.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.5e-152269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++    G g+W+ Iar  g+ R++k+c++rw +yl
     EcC002007.50 22 KGLWSPEEDEKLMRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL 69
                     678*******************************************97 PP
2Myb_DNA-binding543.9e-1775119147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++++E+el+v++++ lG++ W+ Ia++++ gRt++++k++w++ 
     EcC002007.50  75 RGAFSPQEEELIVHLHNILGNR-WSQIAARLP-GRTDNEIKNFWNST 119
                      89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.3691769IPR017930Myb domain
SuperFamilySSF466891.09E-2820116IPR009057Homeodomain-like
SMARTSM007172.1E-112171IPR001005SANT/Myb domain
PfamPF002495.8E-142269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-232376IPR009057Homeodomain-like
CDDcd001673.56E-102569No hitNo description
PROSITE profilePS5129425.54570124IPR017930Myb domain
SMARTSM007171.6E-1674122IPR001005SANT/Myb domain
PfamPF002491.9E-1575119IPR001005SANT/Myb domain
CDDcd001672.95E-1277120No hitNo description
Gene3DG3DSA:1.10.10.605.2E-2677124IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006855Biological Processdrug transmembrane transport
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0015238Molecular Functiondrug transmembrane transporter activity
GO:0015297Molecular Functionantiporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGMATGIKEK ASSNPHNHKL RKGLWSPEED EKLMRYMLTN GQGCWSDIAR NAGLQRCGKS  60
CRLRWINYLR PDLKRGAFSP QEEELIVHLH NILGNRWSQI AARLPGRTDN EIKNFWNSTL  120
KKRLKMNSAT SSSNDSDLSN PQDIAAGIMP SFHAQYDVLA TCMDSSPAPF PPMDNISAPN  180
HFDPFPTLNN RCDTWEGVGF FTFPSGIAPV SMGDDSSYLN LEHAKVGLLG SEFSVPPLAS  240
STTTTEENNY RSIGCGMDGK GENSFSNNND SCFSNTTTAS FKAEDDMSGF GNNLQAANLR  300
IGEWDLEGLM DDLPSFPFLD F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-27191241105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-27201242105C-Myb DNA-Binding Domain
1msf_C2e-27201242105C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119125LKKRLKM
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067873.10.0PREDICTED: transcription factor MYB46
SwissprotQ9C6U16e-76MYB83_ARATH; Transcription factor MYB83
TrEMBLI0IK150.0I0IK15_EUCGG; MYB transcription factor 2
TrEMBLQ70KC50.0Q70KC5_EUCGU; MYB transcription factor
STRINGXP_010067873.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.13e-76myb domain protein 83
Publications ? help Back to Top
  1. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]
  2. Piya S,Kihm C,Rice JH,Baum TJ,Hewezi T
    Cooperative Regulatory Functions of miR858 and MYB83 during Cyst Nematode Parasitism.
    Plant Physiol., 2017. 174(3): p. 1897-1912
    [PMID:28512179]