PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC001939.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 263aa    MW: 29325.8 Da    PI: 4.8783
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC001939.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.2e-082341648
                     HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +k +G g W+ I++  g++R++k+c+ rw++yl
     EcC001939.10  2 IKVHGEGKWRNIPKIAGLKRCGKSCRMRWLNYL 34
                     789****************************97 PP
2Myb_DNA-binding50.45e-164084147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg+ T +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
     EcC001939.10 40 RGNITSDEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSN 84
                     7999******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001672.57E-4134No hitNo description
SMARTSM0071716136IPR001005SANT/Myb domain
PROSITE profilePS5129412.217134IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-15141IPR009057Homeodomain-like
SuperFamilySSF466893.95E-22281IPR009057Homeodomain-like
PfamPF002491.5E-6234IPR001005SANT/Myb domain
PROSITE profilePS5129423.6723589IPR017930Myb domain
SMARTSM007178.7E-153987IPR001005SANT/Myb domain
PfamPF002493.8E-144084IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-234287IPR009057Homeodomain-like
CDDcd001671.31E-104485No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
YIKVHGEGKW RNIPKIAGLK RCGKSCRMRW LNYLRPDIKR GNITSDEEDL ILRLHKLLGN  60
RWSLIAGRLP GRTDNEIKNY WNSNLAKREQ GGKKPNPSKT ENIKPIATSE VKQDETQNPE  120
LVGDSALRNK DIVTLANSET AKSGQSSEYE SSDVSLPASM SREEPNLEQL MLDCTVGESD  180
LLEILDGSDF RFNKFEDISQ VMNSVENEAM SKNNNVGAAS PGQAHNLSSE GLEMDDWIAD  240
LAEMSSGFGS FSSILHGPED WIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2028822107B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047391.10.0PREDICTED: transcription factor WER
TrEMBLA0A059CMZ81e-157A0A059CMZ8_EUCGR; Uncharacterized protein
STRINGXP_010047391.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.11e-49MYB family protein