PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC001753.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 337aa    MW: 39501.1 Da    PI: 6.9636
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC001753.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR126.61.9e-088504891
          FAR1 48 tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
                  +++++ +rae r+gC a++k k + +g++ev++ + eHnH+++p
  EcC001753.10  8 DQDKKFERAEVRCGCPAHIKFKGD-NGVYEVIEYVFEHNHAFVP 50
                  3567889***************99.***************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-6850IPR004330FAR1 DNA binding domain
PfamPF105512.4E-30171265IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
GHSITSSDQD KKFERAEVRC GCPAHIKFKG DNGVYEVIEY VFEHNHAFVP EDQKHLIRCG  60
RMISDTCKGV LSGMMKAGIG GTTAYKFLAN EAGGSKNLGF ILRDCQKKLE TESNKIIEGG  120
DCQQLLNHFH RMQMQNPMFF YVVQVDQEGR LTNLFWRDSL SKFDYDCFGD VLVFDSTYRT  180
NRYSLICAPF VGVNDHWKNT LFGCAFLLDE TAESFIWLFN VFLESMGDKA PKTIFIYQDQ  240
AMAKAIRMVF PNIQHHLCTW HIIQNAIKNI PQLYHKPDFR DKYFFRLMYR CKSEDKFEST  300
WMEMEEEWDT QNDNWLQRLY GLRHKWSLAF GRDIFSC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010056981.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A059ADA90.0A0A059ADA9_EUCGR; Uncharacterized protein
STRINGXP_010027018.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-71FAR1-related sequence 5