PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC001316.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 879aa MW: 98784.2 Da PI: 6.4344

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC001316.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.1	9e-16	86	159	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA++vGFs+++ + ++ + +g i++ +f Cs+e ++++ ++ C+a+l+++++++++w+v+k+++eHnH+ EcC001316.20 86 SFYDTYARHVGFSTQVGQFSRCRPDGPIVSWDFACSREVLKRKNIES--------------CNAMLRIERKDSDNWVVSKFVEEHNHS 159 5*************************************9998877..............************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.7E-13	86	159	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.7E-29	293	385	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.93	570	606	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.5E-10	571	604	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.5E-7	581	608	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0003824	Molecular Function	catalytic activity
GO:0005509	Molecular Function	calcium ion binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 879 aa Download sequence Send to blast
ARRAYGSDSP PLLSTLGYEL DTMEVESVDK NGVPRGHRVA RNVVHDQGDE STSDTCSDRE 60 TTTSGYDIRV KPCVGMQFES EEAARSFYDT YARHVGFSTQ VGQFSRCRPD GPIVSWDFAC 120 SREVLKRKNI ESCNAMLRIE RKDSDNWVVS KFVEEHNHST ATPSKVHHLR PSRHFASATK 180 NVSEPLDAIS DAHASLDGNH ISIEPNRGGR NISPVESNHL ARNIGSINYM RPSTQKRNLG 240 RDAQNLLDYF KKMQAENPGF YYAIQLDDDN RMTNVFWADA RSRAAYTYFG DAVVFDTMYR 300 PNQYQVPLAP FTGVNNHGQM ILFGCALLLD ESESSFAWLF RTWLSAVNDR PPVSITTDQD 360 RAIQAAVAQV LPQTRHCICK WHILREGQER LAHIYLAQPS FYGDLYSCIN FTETIEDFEA 420 SWVALLDRYG LQKNEWLQAV YNARKQWAPV YFRDTFFAAI SSNQGVSSFF DGYVNQQTTV 480 PLFFKQYERA LESSLEKEIE ADYDTMGTTP VLKTPSPMEQ QAANLYSKKI FAKFQEELVE 540 TFVYTANKIE DDGVINKYRV AEYGHDDKAF IVTLNVSGMK ASCSCQMFEY SGVLCRHILT 600 VFTVTNVLTL PSHYILKRWT SNAKSLLGSE EQNSDPHGIE TLTSRFNSLC REAIQYAEEG 660 AIAMETYNAA MSALKEGIRK IASVKKGIPK VALPSSQSSG SNEDSSKKTS SSVPEMFPAL 720 WPWQGAYPPR FNLNNNGVPV ADLTQPSLAP VSIQHDNGTL DDTVVLTCFK SMTWVIESST 780 AALAGKIAVV NLKLQDYGKI PCGETEVQFR LTRVTLEPML RSMAYISQQL SSPTNKVAVI 840 NLKLQDTKTS TGETEVKFQV SRDTLGLMLR SMAYIREQL

Sequence ? help Back to Top

Protein Sequence Length: 879 aa Download sequence Send to blast

ARRAYGSDSP PLLSTLGYEL DTMEVESVDK NGVPRGHRVA RNVVHDQGDE STSDTCSDRE  60
TTTSGYDIRV KPCVGMQFES EEAARSFYDT YARHVGFSTQ VGQFSRCRPD GPIVSWDFAC  120
SREVLKRKNI ESCNAMLRIE RKDSDNWVVS KFVEEHNHST ATPSKVHHLR PSRHFASATK  180
NVSEPLDAIS DAHASLDGNH ISIEPNRGGR NISPVESNHL ARNIGSINYM RPSTQKRNLG  240
RDAQNLLDYF KKMQAENPGF YYAIQLDDDN RMTNVFWADA RSRAAYTYFG DAVVFDTMYR  300
PNQYQVPLAP FTGVNNHGQM ILFGCALLLD ESESSFAWLF RTWLSAVNDR PPVSITTDQD  360
RAIQAAVAQV LPQTRHCICK WHILREGQER LAHIYLAQPS FYGDLYSCIN FTETIEDFEA  420
SWVALLDRYG LQKNEWLQAV YNARKQWAPV YFRDTFFAAI SSNQGVSSFF DGYVNQQTTV  480
PLFFKQYERA LESSLEKEIE ADYDTMGTTP VLKTPSPMEQ QAANLYSKKI FAKFQEELVE  540
TFVYTANKIE DDGVINKYRV AEYGHDDKAF IVTLNVSGMK ASCSCQMFEY SGVLCRHILT  600
VFTVTNVLTL PSHYILKRWT SNAKSLLGSE EQNSDPHGIE TLTSRFNSLC REAIQYAEEG  660
AIAMETYNAA MSALKEGIRK IASVKKGIPK VALPSSQSSG SNEDSSKKTS SSVPEMFPAL  720
WPWQGAYPPR FNLNNNGVPV ADLTQPSLAP VSIQHDNGTL DDTVVLTCFK SMTWVIESST  780
AALAGKIAVV NLKLQDYGKI PCGETEVQFR LTRVTLEPML RSMAYISQQL SSPTNKVAVI  840
NLKLQDTKTS TGETEVKFQV SRDTLGLMLR SMAYIREQL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010067068.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A059BGV7	0.0	A0A059BGV7_EUCGR; Uncharacterized protein
STRING	XP_010067068.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]