PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC001177.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 376aa    MW: 42852.1 Da    PI: 8.1771
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC001177.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-17218264148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+ Ed +l  +v+ +G+++W+ Ia++m  gR +kqc++rw+++l
     EcC001177.20 218 KGQWTPTEDRRLMMLVETHGMKRWSQIAQMMK-GRDGKQCRERWHNHL 264
                      799****************************9.*************97 PP
2Myb_DNA-binding56.75.4e-18270312145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +W+ eEd++l++a+kq G++ W+ Ia++++ gRt++++k++w+
     EcC001177.20 270 KESWSIEEDKILIQAHKQIGNK-WAEIAKRLP-GRTENSIKNHWN 312
                      578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.092213268IPR017930Myb domain
SuperFamilySSF466892.05E-31217311IPR009057Homeodomain-like
SMARTSM007171.3E-15217266IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-27219272IPR009057Homeodomain-like
PfamPF139211.9E-17221278No hitNo description
CDDcd001675.07E-14221264No hitNo description
SMARTSM007171.1E-15269317IPR001005SANT/Myb domain
PROSITE profilePS5129420.899269319IPR017930Myb domain
CDDcd001671.86E-12272315No hitNo description
Gene3DG3DSA:1.10.10.605.0E-22273318IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0030488Biological ProcesstRNA methylation
GO:0045697Biological Processregulation of synergid differentiation
GO:0031515Cellular ComponenttRNA (m1A) methyltransferase complex
GO:0003677Molecular FunctionDNA binding
GO:0016429Molecular FunctiontRNA (adenine-N1-)-methyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MELNLGFSLD LETPPPPPLN VKGFFYNLLH SRSPDILDDD HAFTIEGSSS NPFSRVVSTP  60
QLEPSFPHPC PDPNPAATLP REFDLCAPPL PPTPPPPSME TSPESSDGIV AHGQLDFKSL  120
FHYGPVDQRP YHDPVTEDRQ VVPLLDLNDL GSPNERLGEE AGVSSDHQWG RERDDGRHDR  180
RKREVATGLP QHQSKQKTEK NKKENDKDEA DEEPLVVKGQ WTPTEDRRLM MLVETHGMKR  240
WSQIAQMMKG RDGKQCRERW HNHLRPDIKK ESWSIEEDKI LIQAHKQIGN KWAEIAKRLP  300
GRTENSIKNH WNATKRRQFT KRKLLPDGNN SNLLQNYIRS VTTPSPPKWS PPARGPDHRH  360
HNTKKQSLSL SKAAIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-442153191105C-Myb DNA-Binding Domain
1msf_C3e-442153191105C-Myb DNA-Binding Domain
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018717997.10.0PREDICTED: uncharacterized protein LOC104420634
STRINGXP_010030743.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58692847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-63myb domain protein 98