PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC000293.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 231aa MW: 26468.1 Da PI: 7.9721 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 149.4 | 1.8e-46 | 12 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFh tdeel+ yLk+k+ g++ + +++i+e+d++++ePw+Lp+ k ++ke++f+++ ++ky +++r+ r+t++gyWk tgk++++ls EcC000293.10 12 LPPGFRFHATDEELLLLYLKPKILGQPeEHYSNIIPEIDVCESEPWQLPAmfDRKFNRKELFFYCRVKRKYVNSRRSDRTTRAGYWKVTGKERAILS 108 79*************************4444567***************62333447789************************************* PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++e+ g+kktLvfy+gr p+g++t+Wvmhey+l EcC000293.10 109 EdTNEQLGIKKTLVFYEGRVPQGKRTNWVMHEYHL 143 977889****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.72E-49 | 10 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.492 | 12 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-23 | 13 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MEDTISEVMG LLPPGFRFHA TDEELLLLYL KPKILGQPEE HYSNIIPEID VCESEPWQLP 60 AMFDRKFNRK ELFFYCRVKR KYVNSRRSDR TTRAGYWKVT GKERAILSED TNEQLGIKKT 120 LVFYEGRVPQ GKRTNWVMHE YHLNSKFLGG NHAKGEMLPY VACRIKNKKD KKLTMGHAPA 180 ISPEVYSSSP LTSASNVSDP PVNQEGDLLS FCNTPNSEVV DNQRAADTQP E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-33 | 12 | 169 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-33 | 12 | 169 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-33 | 12 | 169 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-33 | 12 | 169 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-33 | 12 | 169 | 20 | 169 | NAC domain-containing protein 19 |
3swm_B | 4e-33 | 12 | 169 | 20 | 169 | NAC domain-containing protein 19 |
3swm_C | 4e-33 | 12 | 169 | 20 | 169 | NAC domain-containing protein 19 |
3swm_D | 4e-33 | 12 | 169 | 20 | 169 | NAC domain-containing protein 19 |
3swp_A | 4e-33 | 12 | 169 | 20 | 169 | NAC domain-containing protein 19 |
3swp_B | 4e-33 | 12 | 169 | 20 | 169 | NAC domain-containing protein 19 |
3swp_C | 4e-33 | 12 | 169 | 20 | 169 | NAC domain-containing protein 19 |
3swp_D | 4e-33 | 12 | 169 | 20 | 169 | NAC domain-containing protein 19 |
4dul_A | 4e-33 | 12 | 169 | 17 | 166 | NAC domain-containing protein 19 |
4dul_B | 4e-33 | 12 | 169 | 17 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010029939.1 | 1e-172 | PREDICTED: protein NTM1-like 9 | ||||
TrEMBL | A0A059DCT8 | 1e-118 | A0A059DCT8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010029939.1 | 1e-172 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM190 | 28 | 276 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 2e-44 | NAC transcription factor-like 9 |