PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

EcC000063.50

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB_related

Protein Properties

Length: 188aa MW: 19345.6 Da PI: 10.7933

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC000063.50	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.6	1.2e-07	26	55	18	47
HTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 18 qlGggtWktIartmgkgRtlkqcksrwqky 47 ++G+g+W++I+r + +Rt+ q+ s+ qky EcC000063.50 26 KYGKGDWRSISRNFVVTRTPTQVASHAQKY 55 8****************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01557	3.3E-9	24	58	IPR006447	Myb domain, plants
SuperFamily	SSF46689	3.78E-8	24	61	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.5E-5	25	54	IPR009057	Homeodomain-like
CDD	cd00167	2.89E-4	26	56	No hit	No description
Pfam	PF00249	1.8E-5	26	55	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007165	Biological Process	signal transduction
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0043531	Molecular Function	ADP binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MICEVNTATA DGRGSDGNPQ KARLDKYGKG DWRSISRNFV VTRTPTQVAS HAQKYFIRLS 60 SVNKDRRRSS IHDITTVGSG DLSAPQGPIT GQNQTDGSAG GVSSGKSNKQ SPQSPAVTSG 120 VAVSGPPPSI GQPVGGPFVS AVGTPVNLST APHMAYGVRG QVQGTVVPGA PINMGSVTYP 180 MPHASAHR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010031381.1	1e-114	PREDICTED: transcription factor DIVARICATA
Swissprot	Q9FNN6	5e-55	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A059ABA1	1e-113	A0A059ABA1_EUCGR; Uncharacterized protein
STRING	XP_010031380.1	1e-113	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	2e-57	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]