PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS74429.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

WRKY

Protein Properties

Length: 97aa MW: 11089.7 Da PI: 10.3419

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS74429.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.8	1.9e-32	35	93	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+a+dp ++ itYegeH+h+ EPS74429.1 35 ADDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERDADDPAMLLITYEGEHKHN 93 69***********************988**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.2E-14	4	32	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	8.3E-34	22	94	IPR003657	WRKY domain
PROSITE profile	PS50811	29.838	29	95	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-27	31	94	IPR003657	WRKY domain
SMART	SM00774	7.1E-37	34	94	IPR003657	WRKY domain
Pfam	PF03106	1.3E-27	36	92	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 97 aa Download sequence Send to blast
SRCSSRCHCS KKRKMRIKST IRVPAISMKL ADIPADDYSW RKYGQKPIKG SPHPRGYYKC 60 SSVRGCPARK HVERDADDPA MLLITYEGEH KHNNSNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-23	22	93	2	72	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014510375.1	8e-54	probable WRKY transcription factor 15 isoform X2
Swissprot	Q32SG4	5e-51	WRKY1_MAIZE; Protein WRKY1
TrEMBL	S8D3X6	2e-65	S8D3X6_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_008238914.1	2e-52	(Prunus mume)
STRING	XP_004172958.1	8e-53	(Cucumis sativus)
STRING	EMJ06751	2e-52	(Prunus persica)
STRING	GLYMA17G18480.1	2e-52	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1220	24	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31550.2	1e-47	WRKY DNA-binding protein 11

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]